Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-1A0A0B4J248 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-1A0A0B4J248 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC19.97■□□□□ 0.79
TRAV1-1A0A0B4J248 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-1A0A0B4J248 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-1A0A0B4J248 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.97■□□□□ 0.79
TRAV1-1A0A0B4J248 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV1-1A0A0B4J248 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV1-1A0A0B4J248 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.96■□□□□ 0.79
TRAV1-1A0A0B4J248 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
TRAV1-1A0A0B4J248 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TRAV1-1A0A0B4J248 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TRAV1-1A0A0B4J248 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV1-1A0A0B4J248 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV1-1A0A0B4J248 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV1-1A0A0B4J248 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV1-1A0A0B4J248 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV1-1A0A0B4J248 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
TRAV1-1A0A0B4J248 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV1-1A0A0B4J248 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV1-1A0A0B4J248 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC19.92■□□□□ 0.78
TRAV1-1A0A0B4J248 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV1-1A0A0B4J248 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.92■□□□□ 0.78
TRAV1-1A0A0B4J248 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
TRAV1-1A0A0B4J248 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAV1-1A0A0B4J248 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAV1-1A0A0B4J248 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRAV1-1A0A0B4J248 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV1-1A0A0B4J248 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV1-1A0A0B4J248 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.89■□□□□ 0.77
TRAV1-1A0A0B4J248 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV1-1A0A0B4J248 DUSP8P4-201ENST00000399538 1761 ntBASIC19.88■□□□□ 0.77
TRAV1-1A0A0B4J248 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.88■□□□□ 0.77
TRAV1-1A0A0B4J248 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.87■□□□□ 0.77
TRAV1-1A0A0B4J248 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.87■□□□□ 0.77
TRAV1-1A0A0B4J248 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV1-1A0A0B4J248 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV1-1A0A0B4J248 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV1-1A0A0B4J248 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV1-1A0A0B4J248 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV1-1A0A0B4J248 WASH5P-204ENST00000632292 975 ntBASIC19.86■□□□□ 0.77
TRAV1-1A0A0B4J248 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV1-1A0A0B4J248 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.85■□□□□ 0.77
TRAV1-1A0A0B4J248 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV1-1A0A0B4J248 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.85■□□□□ 0.77
TRAV1-1A0A0B4J248 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV1-1A0A0B4J248 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV1-1A0A0B4J248 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
TRAV1-1A0A0B4J248 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRAV1-1A0A0B4J248 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.83■□□□□ 0.76
TRAV1-1A0A0B4J248 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-1A0A0B4J248 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
TRAV1-1A0A0B4J248 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-1A0A0B4J248 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-1A0A0B4J248 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-1A0A0B4J248 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV1-1A0A0B4J248 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-1A0A0B4J248 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-1A0A0B4J248 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV1-1A0A0B4J248 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV1-1A0A0B4J248 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TRAV1-1A0A0B4J248 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAV1-1A0A0B4J248 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV1-1A0A0B4J248 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV1-1A0A0B4J248 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TRAV1-1A0A0B4J248 AP002414.2-202ENST00000590929 1450 ntBASIC19.79■□□□□ 0.76
TRAV1-1A0A0B4J248 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV1-1A0A0B4J248 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV1-1A0A0B4J248 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV1-1A0A0B4J248 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TRAV1-1A0A0B4J248 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC19.77■□□□□ 0.76
TRAV1-1A0A0B4J248 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TRAV1-1A0A0B4J248 AC092803.2-201ENST00000564287 1899 ntBASIC19.77■□□□□ 0.76
TRAV1-1A0A0B4J248 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV1-1A0A0B4J248 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV1-1A0A0B4J248 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV1-1A0A0B4J248 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV1-1A0A0B4J248 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms