Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.05
SENP3-EIF4A1A0A087X0R7 AC021231.2-201ENST00000594613 730 ntBASIC34.07■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC34.06■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC34.06■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC34.05■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC34.04■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 AC135983.2-203ENST00000454486 1613 ntBASIC34.04■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 AC016575.1-201ENST00000607026 382 ntBASIC34.03■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC34.02■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 AC142086.6-201ENST00000621154 1765 ntBASIC34.01■■■■□ 3.04
SENP3-EIF4A1A0A087X0R7 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC34.01■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC34■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 AC019069.1-201ENST00000610008 1333 ntBASIC34■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC34■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC33.99■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 EI24-212ENST00000615917 1407 ntTSL 2 BASIC33.99■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC33.99■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC33.99■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC33.99■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC33.99■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC33.98■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC33.97■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC33.97■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC33.96■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC33.96■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC33.95■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC33.95■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC33.95■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC33.95■■■■□ 3.03
SENP3-EIF4A1A0A087X0R7 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC33.94■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC33.94■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC33.94■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC33.93■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC33.93■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 MIR3648-2-201ENST00000581792 180 ntBASIC33.92■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 MIR3648-1-201ENST00000615959 180 ntBASIC33.92■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC33.92■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC33.92■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC33.91■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC33.91■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 LINC00273-201ENST00000539813 1452 ntBASIC33.91■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 GDI1-215ENST00000630693 786 ntTSL 4 BASIC33.91■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC33.9■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 DUX4L29-201ENST00000425409 679 ntBASIC33.89■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC33.89■■■■□ 3.02
SENP3-EIF4A1A0A087X0R7 AP004833.2-201ENST00000532228 1454 ntBASIC33.88■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC33.87■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC33.87■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC33.87■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC33.86■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 RNF166-209ENST00000567844 633 ntTSL 5 BASIC33.86■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC33.85■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC33.85■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC33.85■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC33.84■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
SENP3-EIF4A1A0A087X0R7 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC33.82■■■■□ 3
SENP3-EIF4A1A0A087X0R7 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC33.82■■■■□ 3
SENP3-EIF4A1A0A087X0R7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
SENP3-EIF4A1A0A087X0R7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC33.81■■■■□ 3
SENP3-EIF4A1A0A087X0R7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
SENP3-EIF4A1A0A087X0R7 ABHD17AP5-201ENST00000580133 923 ntBASIC33.81■■■■□ 3
SENP3-EIF4A1A0A087X0R7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC33.8■■■■□ 3
SENP3-EIF4A1A0A087X0R7 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
SENP3-EIF4A1A0A087X0R7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
SENP3-EIF4A1A0A087X0R7 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
SENP3-EIF4A1A0A087X0R7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC33.78■■■■□ 3
SENP3-EIF4A1A0A087X0R7 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
SENP3-EIF4A1A0A087X0R7 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
SENP3-EIF4A1A0A087X0R7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC33.77■■■■□ 3
SENP3-EIF4A1A0A087X0R7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC33.77■■■■□ 3
SENP3-EIF4A1A0A087X0R7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC33.77■■■■□ 3
SENP3-EIF4A1A0A087X0R7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC33.77■■■■□ 3
SENP3-EIF4A1A0A087X0R7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC33.76■■■■□ 3
SENP3-EIF4A1A0A087X0R7 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC33.76■■■■□ 3
SENP3-EIF4A1A0A087X0R7 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC33.76■■■□□ 2.99
SENP3-EIF4A1A0A087X0R7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■□□ 2.99
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms