Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LSM4Q9Y4Z0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LSM4Q9Y4Z0 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LSM4Q9Y4Z0 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.41■□□□□ 0.86
LSM4Q9Y4Z0 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LSM4Q9Y4Z0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC20.41■□□□□ 0.86
LSM4Q9Y4Z0 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
LSM4Q9Y4Z0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LSM4Q9Y4Z0 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LSM4Q9Y4Z0 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LSM4Q9Y4Z0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LSM4Q9Y4Z0 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LSM4Q9Y4Z0 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
LSM4Q9Y4Z0 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
LSM4Q9Y4Z0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM4Q9Y4Z0 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM4Q9Y4Z0 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
LSM4Q9Y4Z0 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
LSM4Q9Y4Z0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LSM4Q9Y4Z0 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LSM4Q9Y4Z0 BX255925.1-201ENST00000566954 1854 ntBASIC20.39■□□□□ 0.85
LSM4Q9Y4Z0 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.38■□□□□ 0.85
LSM4Q9Y4Z0 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.38■□□□□ 0.85
LSM4Q9Y4Z0 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
LSM4Q9Y4Z0 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
LSM4Q9Y4Z0 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.38■□□□□ 0.85
LSM4Q9Y4Z0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LSM4Q9Y4Z0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
LSM4Q9Y4Z0 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LSM4Q9Y4Z0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LSM4Q9Y4Z0 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.37■□□□□ 0.85
LSM4Q9Y4Z0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LSM4Q9Y4Z0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
LSM4Q9Y4Z0 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.36■□□□□ 0.85
LSM4Q9Y4Z0 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
LSM4Q9Y4Z0 AP004833.2-201ENST00000532228 1454 ntBASIC20.36■□□□□ 0.85
LSM4Q9Y4Z0 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LSM4Q9Y4Z0 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM4Q9Y4Z0 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.35■□□□□ 0.85
LSM4Q9Y4Z0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.35■□□□□ 0.85
LSM4Q9Y4Z0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM4Q9Y4Z0 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.35■□□□□ 0.85
LSM4Q9Y4Z0 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LSM4Q9Y4Z0 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
LSM4Q9Y4Z0 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LSM4Q9Y4Z0 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LSM4Q9Y4Z0 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LSM4Q9Y4Z0 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LSM4Q9Y4Z0 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
LSM4Q9Y4Z0 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 HLA-V-202ENST00000446817 847 ntBASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.32■□□□□ 0.84
LSM4Q9Y4Z0 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LSM4Q9Y4Z0 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.31■□□□□ 0.84
LSM4Q9Y4Z0 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.31■□□□□ 0.84
LSM4Q9Y4Z0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.31■□□□□ 0.84
LSM4Q9Y4Z0 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LSM4Q9Y4Z0 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM4Q9Y4Z0 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.29■□□□□ 0.84
LSM4Q9Y4Z0 ZNRF2P2-203ENST00000454624 420 ntBASIC20.29■□□□□ 0.84
LSM4Q9Y4Z0 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
LSM4Q9Y4Z0 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.29■□□□□ 0.84
LSM4Q9Y4Z0 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LSM4Q9Y4Z0 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.28■□□□□ 0.84
LSM4Q9Y4Z0 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
LSM4Q9Y4Z0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM4Q9Y4Z0 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LSM4Q9Y4Z0 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.28■□□□□ 0.84
LSM4Q9Y4Z0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LSM4Q9Y4Z0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.27■□□□□ 0.84
LSM4Q9Y4Z0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LSM4Q9Y4Z0 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LSM4Q9Y4Z0 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LSM4Q9Y4Z0 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM4Q9Y4Z0 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LSM4Q9Y4Z0 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM4Q9Y4Z0 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM4Q9Y4Z0 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
LSM4Q9Y4Z0 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
LSM4Q9Y4Z0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LSM4Q9Y4Z0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM4Q9Y4Z0 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LSM4Q9Y4Z0 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM4Q9Y4Z0 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
LSM4Q9Y4Z0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LSM4Q9Y4Z0 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
LSM4Q9Y4Z0 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LSM4Q9Y4Z0 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms