Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDH9Q9HC56 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDH9Q9HC56 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PCDH9Q9HC56 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC26.5■■□□□ 1.83
PCDH9Q9HC56 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC26.49■■□□□ 1.83
PCDH9Q9HC56 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDH9Q9HC56 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PCDH9Q9HC56 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 PROC-203ENST00000409048 1586 ntTSL 5 BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
PCDH9Q9HC56 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PCDH9Q9HC56 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.46■■□□□ 1.83
PCDH9Q9HC56 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
PCDH9Q9HC56 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
PCDH9Q9HC56 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDH9Q9HC56 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDH9Q9HC56 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDH9Q9HC56 AC044849.2-201ENST00000606596 710 ntBASIC26.45■■□□□ 1.82
PCDH9Q9HC56 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDH9Q9HC56 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDH9Q9HC56 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
PCDH9Q9HC56 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PCDH9Q9HC56 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
PCDH9Q9HC56 AC108673.1-201ENST00000510422 1159 ntBASIC26.44■■□□□ 1.82
PCDH9Q9HC56 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC26.44■■□□□ 1.82
PCDH9Q9HC56 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDH9Q9HC56 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.43■■□□□ 1.82
PCDH9Q9HC56 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
PCDH9Q9HC56 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.43■■□□□ 1.82
PCDH9Q9HC56 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
PCDH9Q9HC56 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.82
PCDH9Q9HC56 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PCDH9Q9HC56 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
PCDH9Q9HC56 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDH9Q9HC56 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC26.41■■□□□ 1.82
PCDH9Q9HC56 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDH9Q9HC56 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.41■■□□□ 1.82
PCDH9Q9HC56 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.41■■□□□ 1.82
PCDH9Q9HC56 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDH9Q9HC56 AL121749.1-202ENST00000609313 2153 ntBASIC26.4■■□□□ 1.82
PCDH9Q9HC56 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
PCDH9Q9HC56 MIR6090-201ENST00000622481 60 ntBASIC26.4■■□□□ 1.82
PCDH9Q9HC56 BX255925.1-201ENST00000566954 1854 ntBASIC26.4■■□□□ 1.82
PCDH9Q9HC56 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.39■■□□□ 1.82
PCDH9Q9HC56 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
PCDH9Q9HC56 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDH9Q9HC56 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDH9Q9HC56 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
PCDH9Q9HC56 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PCDH9Q9HC56 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PCDH9Q9HC56 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PCDH9Q9HC56 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PCDH9Q9HC56 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDH9Q9HC56 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PCDH9Q9HC56 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
PCDH9Q9HC56 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.35■■□□□ 1.81
PCDH9Q9HC56 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDH9Q9HC56 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PCDH9Q9HC56 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
PCDH9Q9HC56 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PCDH9Q9HC56 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDH9Q9HC56 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
PCDH9Q9HC56 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PCDH9Q9HC56 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PCDH9Q9HC56 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
PCDH9Q9HC56 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.31■■□□□ 1.8
PCDH9Q9HC56 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.31■■□□□ 1.8
PCDH9Q9HC56 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDH9Q9HC56 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDH9Q9HC56 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
PCDH9Q9HC56 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PCDH9Q9HC56 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.3■■□□□ 1.8
PCDH9Q9HC56 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
PCDH9Q9HC56 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDH9Q9HC56 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.29■■□□□ 1.8
PCDH9Q9HC56 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
PCDH9Q9HC56 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.29■■□□□ 1.8
PCDH9Q9HC56 AC100797.4-201ENST00000631653 1827 ntBASIC26.29■■□□□ 1.8
PCDH9Q9HC56 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDH9Q9HC56 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PCDH9Q9HC56 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.28■■□□□ 1.8
PCDH9Q9HC56 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.28■■□□□ 1.8
PCDH9Q9HC56 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.28■■□□□ 1.8
PCDH9Q9HC56 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.27■■□□□ 1.8
PCDH9Q9HC56 LINC01003-201ENST00000564834 1764 ntBASIC26.27■■□□□ 1.8
PCDH9Q9HC56 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PCDH9Q9HC56 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
PCDH9Q9HC56 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
PCDH9Q9HC56 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
PCDH9Q9HC56 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PCDH9Q9HC56 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
PCDH9Q9HC56 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC26.25■■□□□ 1.79
PCDH9Q9HC56 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDH9Q9HC56 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PCDH9Q9HC56 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms