Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
USP42Q9H9J4 AC010864.1-201ENST00000609407 1511 ntBASIC33.11■■■□□ 2.89
USP42Q9H9J4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC33.11■■■□□ 2.89
USP42Q9H9J4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC33.11■■■□□ 2.89
USP42Q9H9J4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
USP42Q9H9J4 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
USP42Q9H9J4 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
USP42Q9H9J4 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC33.09■■■□□ 2.89
USP42Q9H9J4 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC33.09■■■□□ 2.89
USP42Q9H9J4 NTF6A-201ENST00000591175 560 ntBASIC33.09■■■□□ 2.89
USP42Q9H9J4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC33.08■■■□□ 2.89
USP42Q9H9J4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC33.08■■■□□ 2.89
USP42Q9H9J4 AC022413.1-201ENST00000624602 984 ntBASIC33.08■■■□□ 2.89
USP42Q9H9J4 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
USP42Q9H9J4 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
USP42Q9H9J4 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC33.08■■■□□ 2.89
USP42Q9H9J4 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC33.07■■■□□ 2.88
USP42Q9H9J4 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC33.07■■■□□ 2.88
USP42Q9H9J4 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
USP42Q9H9J4 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC33.06■■■□□ 2.88
USP42Q9H9J4 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC33.05■■■□□ 2.88
USP42Q9H9J4 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC33.05■■■□□ 2.88
USP42Q9H9J4 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
USP42Q9H9J4 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC33.04■■■□□ 2.88
USP42Q9H9J4 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC33.04■■■□□ 2.88
USP42Q9H9J4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
USP42Q9H9J4 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC33.03■■■□□ 2.88
USP42Q9H9J4 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
USP42Q9H9J4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC33.02■■■□□ 2.88
USP42Q9H9J4 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC33.02■■■□□ 2.88
USP42Q9H9J4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
USP42Q9H9J4 AC012354.3-201ENST00000623734 483 ntBASIC33.02■■■□□ 2.88
USP42Q9H9J4 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
USP42Q9H9J4 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
USP42Q9H9J4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC33■■■□□ 2.87
USP42Q9H9J4 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC32.99■■■□□ 2.87
USP42Q9H9J4 AC008813.1-201ENST00000536597 885 ntBASIC32.99■■■□□ 2.87
USP42Q9H9J4 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
USP42Q9H9J4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
USP42Q9H9J4 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC32.98■■■□□ 2.87
USP42Q9H9J4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
USP42Q9H9J4 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
USP42Q9H9J4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC32.98■■■□□ 2.87
USP42Q9H9J4 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC32.98■■■□□ 2.87
USP42Q9H9J4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32.97■■■□□ 2.87
USP42Q9H9J4 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC32.96■■■□□ 2.87
USP42Q9H9J4 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
USP42Q9H9J4 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
USP42Q9H9J4 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
USP42Q9H9J4 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC32.94■■■□□ 2.86
USP42Q9H9J4 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.93■■■□□ 2.86
USP42Q9H9J4 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
USP42Q9H9J4 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
USP42Q9H9J4 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC32.93■■■□□ 2.86
USP42Q9H9J4 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
USP42Q9H9J4 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
USP42Q9H9J4 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC32.92■■■□□ 2.86
USP42Q9H9J4 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC32.9■■■□□ 2.86
USP42Q9H9J4 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC32.9■■■□□ 2.86
USP42Q9H9J4 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC32.9■■■□□ 2.86
USP42Q9H9J4 WHAMMP2-203ENST00000563942 1603 ntBASIC32.88■■■□□ 2.85
USP42Q9H9J4 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC32.87■■■□□ 2.85
USP42Q9H9J4 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC32.87■■■□□ 2.85
USP42Q9H9J4 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC32.87■■■□□ 2.85
USP42Q9H9J4 AC135983.2-203ENST00000454486 1613 ntBASIC32.87■■■□□ 2.85
USP42Q9H9J4 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC32.86■■■□□ 2.85
USP42Q9H9J4 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
USP42Q9H9J4 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
USP42Q9H9J4 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
USP42Q9H9J4 CHST11-203ENST00000547956 936 ntTSL 2 BASIC32.85■■■□□ 2.85
USP42Q9H9J4 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
USP42Q9H9J4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
USP42Q9H9J4 AC127502.1-201ENST00000399971 1502 ntBASIC32.85■■■□□ 2.85
USP42Q9H9J4 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
USP42Q9H9J4 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC32.84■■■□□ 2.85
USP42Q9H9J4 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
USP42Q9H9J4 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
USP42Q9H9J4 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC32.83■■■□□ 2.85
USP42Q9H9J4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.82■■■□□ 2.84
USP42Q9H9J4 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC32.82■■■□□ 2.84
USP42Q9H9J4 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
USP42Q9H9J4 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
USP42Q9H9J4 AC060814.1-201ENST00000554326 538 ntBASIC32.8■■■□□ 2.84
USP42Q9H9J4 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC32.8■■■□□ 2.84
USP42Q9H9J4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
USP42Q9H9J4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
USP42Q9H9J4 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC32.79■■■□□ 2.84
USP42Q9H9J4 U85056.1-201ENST00000616429 682 ntBASIC32.79■■■□□ 2.84
USP42Q9H9J4 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC32.79■■■□□ 2.84
USP42Q9H9J4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.78■■■□□ 2.84
USP42Q9H9J4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.78■■■□□ 2.84
USP42Q9H9J4 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC32.78■■■□□ 2.84
USP42Q9H9J4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC32.78■■■□□ 2.84
USP42Q9H9J4 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.78■■■□□ 2.84
USP42Q9H9J4 AC018358.1-201ENST00000631079 1402 ntBASIC32.78■■■□□ 2.84
USP42Q9H9J4 AL033527.3-201ENST00000566366 1196 ntBASIC32.77■■■□□ 2.84
USP42Q9H9J4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.77■■■□□ 2.84
USP42Q9H9J4 AC148477.6-201ENST00000623746 465 ntBASIC32.77■■■□□ 2.84
USP42Q9H9J4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
USP42Q9H9J4 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms