Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
ABCA4P78363 AC135983.2-203ENST00000454486 1613 ntBASIC22.29■■□□□ 1.16
ABCA4P78363 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
ABCA4P78363 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
ABCA4P78363 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
ABCA4P78363 AC012354.3-201ENST00000623734 483 ntBASIC22.28■■□□□ 1.16
ABCA4P78363 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ABCA4P78363 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
ABCA4P78363 AC148477.6-201ENST00000623746 465 ntBASIC22.28■■□□□ 1.16
ABCA4P78363 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
ABCA4P78363 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
ABCA4P78363 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
ABCA4P78363 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC22.26■■□□□ 1.15
ABCA4P78363 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
ABCA4P78363 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.26■■□□□ 1.15
ABCA4P78363 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.26■■□□□ 1.15
ABCA4P78363 WHAMMP2-203ENST00000563942 1603 ntBASIC22.25■■□□□ 1.15
ABCA4P78363 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
ABCA4P78363 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
ABCA4P78363 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.24■■□□□ 1.15
ABCA4P78363 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
ABCA4P78363 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
ABCA4P78363 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
ABCA4P78363 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
ABCA4P78363 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
ABCA4P78363 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
ABCA4P78363 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
ABCA4P78363 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC22.21■■□□□ 1.15
ABCA4P78363 HES4-202ENST00000428771 1040 ntTSL 2 BASIC22.21■■□□□ 1.15
ABCA4P78363 AC127502.1-201ENST00000399971 1502 ntBASIC22.21■■□□□ 1.15
ABCA4P78363 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.15
ABCA4P78363 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
ABCA4P78363 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
ABCA4P78363 AC018358.1-201ENST00000631079 1402 ntBASIC22.2■■□□□ 1.14
ABCA4P78363 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
ABCA4P78363 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC22.19■■□□□ 1.14
ABCA4P78363 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
ABCA4P78363 AC022413.1-201ENST00000624602 984 ntBASIC22.18■■□□□ 1.14
ABCA4P78363 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
ABCA4P78363 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
ABCA4P78363 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
ABCA4P78363 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
ABCA4P78363 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
ABCA4P78363 AC060814.1-201ENST00000554326 538 ntBASIC22.16■■□□□ 1.14
ABCA4P78363 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC22.15■■□□□ 1.14
ABCA4P78363 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ABCA4P78363 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC22.15■■□□□ 1.14
ABCA4P78363 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC22.15■■□□□ 1.14
ABCA4P78363 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ABCA4P78363 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.15■■□□□ 1.14
ABCA4P78363 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
ABCA4P78363 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC22.14■■□□□ 1.14
ABCA4P78363 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
ABCA4P78363 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
ABCA4P78363 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
ABCA4P78363 AC008813.1-201ENST00000536597 885 ntBASIC22.13■■□□□ 1.13
ABCA4P78363 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.13■■□□□ 1.13
ABCA4P78363 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA4P78363 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ABCA4P78363 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
ABCA4P78363 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
ABCA4P78363 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA4P78363 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.12■■□□□ 1.13
ABCA4P78363 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA4P78363 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA4P78363 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ABCA4P78363 AL135925.1-201ENST00000605920 1701 ntBASIC22.12■■□□□ 1.13
ABCA4P78363 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA4P78363 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA4P78363 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA4P78363 RPS2-210ENST00000530225 765 ntTSL 2 BASIC22.11■■□□□ 1.13
ABCA4P78363 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA4P78363 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
ABCA4P78363 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ABCA4P78363 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
ABCA4P78363 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA4P78363 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
ABCA4P78363 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA4P78363 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.09■■□□□ 1.13
ABCA4P78363 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA4P78363 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.09■■□□□ 1.13
ABCA4P78363 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
ABCA4P78363 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
ABCA4P78363 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.08■■□□□ 1.12
ABCA4P78363 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
ABCA4P78363 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
ABCA4P78363 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
ABCA4P78363 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
ABCA4P78363 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
ABCA4P78363 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
ABCA4P78363 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.06■■□□□ 1.12
ABCA4P78363 AL033527.3-201ENST00000566366 1196 ntBASIC22.06■■□□□ 1.12
ABCA4P78363 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
ABCA4P78363 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
ABCA4P78363 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
ABCA4P78363 KRT18P60-201ENST00000312876 1297 ntBASIC22.05■■□□□ 1.12
ABCA4P78363 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
ABCA4P78363 AC092296.2-201ENST00000589470 999 ntBASIC22.05■■□□□ 1.12
ABCA4P78363 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
ABCA4P78363 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms