Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZNRF2P2-203ENST00000454624 420 ntBASIC25.52■■□□□ 1.68
MSH3P20585 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.51■■□□□ 1.68
MSH3P20585 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.51■■□□□ 1.67
MSH3P20585 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.5■■□□□ 1.67
MSH3P20585 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH3P20585 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH3P20585 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH3P20585 AP004833.2-201ENST00000532228 1454 ntBASIC25.49■■□□□ 1.67
MSH3P20585 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.49■■□□□ 1.67
MSH3P20585 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.49■■□□□ 1.67
MSH3P20585 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.49■■□□□ 1.67
MSH3P20585 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
MSH3P20585 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.48■■□□□ 1.67
MSH3P20585 AC135983.2-203ENST00000454486 1613 ntBASIC25.48■■□□□ 1.67
MSH3P20585 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
MSH3P20585 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.47■■□□□ 1.67
MSH3P20585 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH3P20585 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.45■■□□□ 1.66
MSH3P20585 WHAMMP2-203ENST00000563942 1603 ntBASIC25.45■■□□□ 1.66
MSH3P20585 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
MSH3P20585 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
MSH3P20585 LINC01971-201ENST00000617888 1048 ntBASIC25.43■■□□□ 1.66
MSH3P20585 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH3P20585 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
MSH3P20585 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.43■■□□□ 1.66
MSH3P20585 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
MSH3P20585 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.41■■□□□ 1.66
MSH3P20585 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
MSH3P20585 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
MSH3P20585 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH3P20585 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
MSH3P20585 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.4■■□□□ 1.66
MSH3P20585 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.4■■□□□ 1.66
MSH3P20585 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.39■■□□□ 1.66
MSH3P20585 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.39■■□□□ 1.66
MSH3P20585 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH3P20585 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH3P20585 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.39■■□□□ 1.65
MSH3P20585 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH3P20585 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
MSH3P20585 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.37■■□□□ 1.65
MSH3P20585 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH3P20585 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
MSH3P20585 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH3P20585 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.37■■□□□ 1.65
MSH3P20585 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC25.37■■□□□ 1.65
MSH3P20585 MIR7108-201ENST00000614319 87 ntBASIC25.37■■□□□ 1.65
MSH3P20585 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH3P20585 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH3P20585 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH3P20585 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.36■■□□□ 1.65
MSH3P20585 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.35■■□□□ 1.65
MSH3P20585 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH3P20585 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH3P20585 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.35■■□□□ 1.65
MSH3P20585 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.34■■□□□ 1.65
MSH3P20585 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH3P20585 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH3P20585 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH3P20585 DUX4L11-201ENST00000611504 1267 ntBASIC25.33■■□□□ 1.65
MSH3P20585 DUX4L12-201ENST00000614593 1267 ntBASIC25.33■■□□□ 1.65
MSH3P20585 DUX4L14-201ENST00000621227 1267 ntBASIC25.33■■□□□ 1.65
MSH3P20585 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.33■■□□□ 1.64
MSH3P20585 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH3P20585 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
MSH3P20585 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH3P20585 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH3P20585 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.31■■□□□ 1.64
MSH3P20585 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH3P20585 AC100797.4-201ENST00000631653 1827 ntBASIC25.31■■□□□ 1.64
MSH3P20585 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH3P20585 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH3P20585 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH3P20585 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
MSH3P20585 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
MSH3P20585 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.29■■□□□ 1.64
MSH3P20585 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.29■■□□□ 1.64
MSH3P20585 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
MSH3P20585 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
MSH3P20585 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.29■■□□□ 1.64
MSH3P20585 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH3P20585 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
MSH3P20585 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.28■■□□□ 1.64
MSH3P20585 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.28■■□□□ 1.64
MSH3P20585 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.28■■□□□ 1.64
MSH3P20585 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
MSH3P20585 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L13-201ENST00000554103 1267 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L15-201ENST00000611059 1267 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L23-201ENST00000615195 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L24-201ENST00000617576 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L22-201ENST00000618238 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L20-201ENST00000619712 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L21-201ENST00000622058 1269 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L10-201ENST00000622460 1267 ntBASIC25.27■■□□□ 1.64
MSH3P20585 DUX4L25-201ENST00000624915 1269 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms