Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC32.06■■■□□ 2.72
COL4A1P02462 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
COL4A1P02462 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC32.06■■■□□ 2.72
COL4A1P02462 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC32.06■■■□□ 2.72
COL4A1P02462 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
COL4A1P02462 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC32.04■■■□□ 2.72
COL4A1P02462 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
COL4A1P02462 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
COL4A1P02462 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.71
COL4A1P02462 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.01■■■□□ 2.71
COL4A1P02462 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.99■■■□□ 2.71
COL4A1P02462 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
COL4A1P02462 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
COL4A1P02462 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.98■■■□□ 2.71
COL4A1P02462 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.97■■■□□ 2.71
COL4A1P02462 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.96■■■□□ 2.71
COL4A1P02462 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
COL4A1P02462 TPT1-202ENST00000379055 948 ntTSL 2 BASIC31.95■■■□□ 2.7
COL4A1P02462 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL4A1P02462 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.93■■■□□ 2.7
COL4A1P02462 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
COL4A1P02462 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.92■■■□□ 2.7
COL4A1P02462 ABHD17AP5-201ENST00000580133 923 ntBASIC31.92■■■□□ 2.7
COL4A1P02462 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A1P02462 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A1P02462 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
COL4A1P02462 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.91■■■□□ 2.7
COL4A1P02462 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.91■■■□□ 2.7
COL4A1P02462 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL4A1P02462 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
COL4A1P02462 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.9■■■□□ 2.7
COL4A1P02462 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.9■■■□□ 2.7
COL4A1P02462 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL4A1P02462 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.89■■■□□ 2.7
COL4A1P02462 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.89■■■□□ 2.7
COL4A1P02462 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
COL4A1P02462 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL4A1P02462 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.88■■■□□ 2.69
COL4A1P02462 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL4A1P02462 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL4A1P02462 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.88■■■□□ 2.69
COL4A1P02462 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
COL4A1P02462 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.88■■■□□ 2.69
COL4A1P02462 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.86■■■□□ 2.69
COL4A1P02462 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.86■■■□□ 2.69
COL4A1P02462 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
COL4A1P02462 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC31.86■■■□□ 2.69
COL4A1P02462 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL4A1P02462 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.86■■■□□ 2.69
COL4A1P02462 AC110285.7-201ENST00000624417 1536 ntBASIC31.85■■■□□ 2.69
COL4A1P02462 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL4A1P02462 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL4A1P02462 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.85■■■□□ 2.69
COL4A1P02462 CEP120-209ENST00000515110 606 ntTSL 3 BASIC31.85■■■□□ 2.69
COL4A1P02462 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL4A1P02462 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.85■■■□□ 2.69
COL4A1P02462 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC31.84■■■□□ 2.69
COL4A1P02462 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
COL4A1P02462 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
COL4A1P02462 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
COL4A1P02462 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
COL4A1P02462 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.83■■■□□ 2.69
COL4A1P02462 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL4A1P02462 RNF126P1-201ENST00000567452 1320 ntBASIC31.83■■■□□ 2.69
COL4A1P02462 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.82■■■□□ 2.69
COL4A1P02462 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.82■■■□□ 2.68
COL4A1P02462 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.82■■■□□ 2.68
COL4A1P02462 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL4A1P02462 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL4A1P02462 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
COL4A1P02462 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A1P02462 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A1P02462 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A1P02462 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A1P02462 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A1P02462 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
COL4A1P02462 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.8■■■□□ 2.68
COL4A1P02462 AC148477.6-201ENST00000623746 465 ntBASIC31.8■■■□□ 2.68
COL4A1P02462 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL4A1P02462 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.79■■■□□ 2.68
COL4A1P02462 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL4A1P02462 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC31.79■■■□□ 2.68
COL4A1P02462 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.79■■■□□ 2.68
COL4A1P02462 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC31.78■■■□□ 2.68
COL4A1P02462 AC060814.1-201ENST00000554326 538 ntBASIC31.78■■■□□ 2.68
COL4A1P02462 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
COL4A1P02462 AC008813.1-201ENST00000536597 885 ntBASIC31.77■■■□□ 2.68
COL4A1P02462 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL4A1P02462 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.77■■■□□ 2.68
COL4A1P02462 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
COL4A1P02462 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
COL4A1P02462 ST7-AS1-201ENST00000456775 1889 ntBASIC31.76■■■□□ 2.67
COL4A1P02462 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL4A1P02462 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL4A1P02462 AC022413.1-201ENST00000624602 984 ntBASIC31.75■■■□□ 2.67
COL4A1P02462 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.75■■■□□ 2.67
COL4A1P02462 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL4A1P02462 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL4A1P02462 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL4A1P02462 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms