Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.22■■□□□ 1.63
CACNA1AO00555 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC25.22■■□□□ 1.63
CACNA1AO00555 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.22■■□□□ 1.63
CACNA1AO00555 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CACNA1AO00555 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CACNA1AO00555 OR2A1-AS1-204ENST00000470435 602 ntBASIC25.21■■□□□ 1.63
CACNA1AO00555 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.21■■□□□ 1.63
CACNA1AO00555 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC25.2■■□□□ 1.62
CACNA1AO00555 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.2■■□□□ 1.62
CACNA1AO00555 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CACNA1AO00555 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CACNA1AO00555 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CACNA1AO00555 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CACNA1AO00555 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CACNA1AO00555 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CACNA1AO00555 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.18■■□□□ 1.62
CACNA1AO00555 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CACNA1AO00555 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1AO00555 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CACNA1AO00555 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
CACNA1AO00555 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1AO00555 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1AO00555 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1AO00555 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1AO00555 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1AO00555 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.16■■□□□ 1.62
CACNA1AO00555 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1AO00555 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC25.15■■□□□ 1.62
CACNA1AO00555 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
CACNA1AO00555 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CACNA1AO00555 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CACNA1AO00555 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1AO00555 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1AO00555 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.12■■□□□ 1.61
CACNA1AO00555 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.12■■□□□ 1.61
CACNA1AO00555 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1AO00555 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1AO00555 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.1■■□□□ 1.61
CACNA1AO00555 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1AO00555 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1AO00555 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CACNA1AO00555 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC25.1■■□□□ 1.61
CACNA1AO00555 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.1■■□□□ 1.61
CACNA1AO00555 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.09■■□□□ 1.61
CACNA1AO00555 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
CACNA1AO00555 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.08■■□□□ 1.61
CACNA1AO00555 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CACNA1AO00555 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CACNA1AO00555 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CACNA1AO00555 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC25.07■■□□□ 1.6
CACNA1AO00555 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.06■■□□□ 1.6
CACNA1AO00555 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
CACNA1AO00555 AC148477.6-201ENST00000623746 465 ntBASIC25.06■■□□□ 1.6
CACNA1AO00555 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1AO00555 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CACNA1AO00555 LINC00273-201ENST00000539813 1452 ntBASIC25.05■■□□□ 1.6
CACNA1AO00555 RP9P-202ENST00000450133 1212 ntBASIC25.05■■□□□ 1.6
CACNA1AO00555 DUX4L18-201ENST00000553347 1267 ntBASIC25.04■■□□□ 1.6
CACNA1AO00555 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CACNA1AO00555 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1AO00555 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1AO00555 AC092666.2-201ENST00000613287 246 ntBASIC25.03■■□□□ 1.6
CACNA1AO00555 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1AO00555 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1AO00555 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1AO00555 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CACNA1AO00555 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.02■■□□□ 1.6
CACNA1AO00555 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
CACNA1AO00555 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC25.01■■□□□ 1.6
CACNA1AO00555 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC25.01■■□□□ 1.59
CACNA1AO00555 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
CACNA1AO00555 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC25.01■■□□□ 1.59
CACNA1AO00555 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CACNA1AO00555 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CACNA1AO00555 MIR638-201ENST00000385237 100 ntBASIC25■■□□□ 1.59
CACNA1AO00555 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CACNA1AO00555 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25■■□□□ 1.59
CACNA1AO00555 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CACNA1AO00555 KRT8P33-201ENST00000508125 1423 ntBASIC24.99■■□□□ 1.59
CACNA1AO00555 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
CACNA1AO00555 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.99■■□□□ 1.59
CACNA1AO00555 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC24.98■■□□□ 1.59
CACNA1AO00555 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC24.96■■□□□ 1.59
CACNA1AO00555 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CACNA1AO00555 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC24.96■■□□□ 1.59
CACNA1AO00555 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
CACNA1AO00555 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
CACNA1AO00555 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CACNA1AO00555 ECEL1P2-201ENST00000461596 1295 ntBASIC24.94■■□□□ 1.58
CACNA1AO00555 AC008406.3-201ENST00000620001 1374 ntBASIC24.94■■□□□ 1.58
CACNA1AO00555 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CACNA1AO00555 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CACNA1AO00555 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC24.93■■□□□ 1.58
CACNA1AO00555 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CACNA1AO00555 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
CACNA1AO00555 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
CACNA1AO00555 CHST11-203ENST00000547956 936 ntTSL 2 BASIC24.91■■□□□ 1.58
CACNA1AO00555 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.91■■□□□ 1.58
CACNA1AO00555 SPCS2P3-201ENST00000500401 656 ntBASIC24.9■■□□□ 1.58
CACNA1AO00555 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.9■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms