Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 SBF1P1-201ENST00000444527 5631 ntBASIC13.67□□□□□ -0.22
VPS25Q9BRG1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 PCDHA1-201ENST00000378133 2726 ntBASIC13.66□□□□□ -0.22
VPS25Q9BRG1 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 AC087742.1-201ENST00000575880 1738 ntBASIC13.66□□□□□ -0.22
VPS25Q9BRG1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
VPS25Q9BRG1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 NORAD-201ENST00000565493 5339 ntBASIC13.65□□□□□ -0.22
VPS25Q9BRG1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC13.65□□□□□ -0.22
VPS25Q9BRG1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
VPS25Q9BRG1 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS25Q9BRG1 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms