RNA–Protein interactions for RNA: ENST00000248054.9

SIN3B-201, Transcript of SIN3 transcription regulator family member B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SIN3B, Length 5,037 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIN3B-201ENST00000248054 NISCHQ9Y2I1 1504 aa29.6■■■□□ 2.33
SIN3B-201ENST00000248054 DCAF8L2P0C7V8 631 aa27.69■■■□□ 2.02
SIN3B-201ENST00000248054 SUPT5HO00267 1087 aaKnown RBP26.45■■□□□ 1.82
SIN3B-201ENST00000248054 SHROOM4Q9ULL8 1493 aa26.45■■□□□ 1.82
SIN3B-201ENST00000248054 CCDC180Q9P1Z9 1646 aa24.99■■□□□ 1.59
SIN3B-201ENST00000248054 PELP1Q8IZL8 1130 aaKnown RBP24.9■■□□□ 1.58
SIN3B-201ENST00000248054 TRIM41Q8WV44 630 aa24.82■■□□□ 1.56
SIN3B-201ENST00000248054 ABCC9O60706 1549 aa24.74■■□□□ 1.55
SIN3B-201ENST00000248054 EHMT2Q96KQ7 1210 aa24.71■■□□□ 1.55
SIN3B-201ENST00000248054 ZCCHC6Q5VYS8 1495 aaKnown RBP24.69■■□□□ 1.54
SIN3B-201ENST00000248054 FAM9AQ8IZU1 332 aaPredicted RBP24.67■■□□□ 1.54
SIN3B-201ENST00000248054 APLP2Q06481 763 aa24.66■■□□□ 1.54
SIN3B-201ENST00000248054 PCGF6Q9BYE7 350 aa24.46■■□□□ 1.51
SIN3B-201ENST00000248054 HRCP23327 699 aa24.41■■□□□ 1.5
SIN3B-201ENST00000248054 MYT1Q01538 1121 aa24.33■■□□□ 1.49
SIN3B-201ENST00000248054 CHIC1Q5VXU3 224 aa24.32■■□□□ 1.48
SIN3B-201ENST00000248054 UBTFP17480 764 aaKnown RBP24.19■■□□□ 1.46
SIN3B-201ENST00000248054 ZEB1P37275 1124 aaPredicted RBP24.08■■□□□ 1.45
SIN3B-201ENST00000248054 PABPN1Q86U42 306 aaKnown RBP eCLIP24.02■■□□□ 1.442e-6■□□□□ 9.6
SIN3B-201ENST00000248054 SCRIBQ14160 1630 aa24.02■■□□□ 1.43
SIN3B-201ENST00000248054 PPARGC1BQ86YN6 1023 aaKnown RBP23.99■■□□□ 1.43
SIN3B-201ENST00000248054 DCAF1Q9Y4B6 1507 aa23.97■■□□□ 1.43
SIN3B-201ENST00000248054 RANGAP1P46060 587 aaPredicted RBP23.89■■□□□ 1.41
SIN3B-201ENST00000248054 NACADO15069 1562 aa23.88■■□□□ 1.41
SIN3B-201ENST00000248054 RB1CC1Q8TDY2 1594 aa23.88■■□□□ 1.41
SIN3B-201ENST00000248054 TTBK1Q5TCY1 1321 aaPredicted RBP23.87■■□□□ 1.41
SIN3B-201ENST00000248054 TRIM26Q12899 539 aaPredicted RBP23.82■■□□□ 1.4
SIN3B-201ENST00000248054 LOC105371045A0A1W2PR82 267 aa23.74■■□□□ 1.39
SIN3B-201ENST00000248054 CCER1Q8TC90 406 aaPredicted RBP23.73■■□□□ 1.39
SIN3B-201ENST00000248054 ATP1B4Q9UN42 357 aaPredicted RBP23.69■■□□□ 1.38
SIN3B-201ENST00000248054 CENPBP07199 599 aaPredicted RBP23.66■■□□□ 1.38
SIN3B-201ENST00000248054 MYO15BQ96JP2 1530 aa23.43■■□□□ 1.34
SIN3B-201ENST00000248054 RSF1Q96T23 1441 aaPredicted RBP23.39■■□□□ 1.33
SIN3B-201ENST00000248054 CSRNP3Q8WYN3 585 aa23.25■■□□□ 1.31
SIN3B-201ENST00000248054 BAZ1AQ9NRL2 1556 aaPredicted RBP23.21■■□□□ 1.31
SIN3B-201ENST00000248054 SCAF1Q9H7N4 1312 aaKnown RBP23.09■■□□□ 1.29
SIN3B-201ENST00000248054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.06■■□□□ 1.28
SIN3B-201ENST00000248054 HNRNPUL2Q1KMD3 747 aaKnown RBP23.06■■□□□ 1.28
SIN3B-201ENST00000248054 YTHDC1Q96MU7 727 aaKnown RBP23.05■■□□□ 1.28
SIN3B-201ENST00000248054 ERICH6Q7L0X2 663 aa23.04■■□□□ 1.28
SIN3B-201ENST00000248054 GTF3C3Q9Y5Q9 886 aa23■■□□□ 1.27
SIN3B-201ENST00000248054 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
SIN3B-201ENST00000248054 ITGAEP38570 1179 aa22.99■■□□□ 1.27
SIN3B-201ENST00000248054 EEA1Q15075 1411 aa22.97■■□□□ 1.27
SIN3B-201ENST00000248054 CECR2Q9BXF3 1484 aa22.94■■□□□ 1.26
SIN3B-201ENST00000248054 NEFLP07196 543 aa22.92■■□□□ 1.26
SIN3B-201ENST00000248054 ACIN1Q9UKV3 1341 aaKnown RBP22.88■■□□□ 1.25
SIN3B-201ENST00000248054 WRNQ14191 1432 aaPredicted RBP eCLIP22.79■■□□□ 1.24
SIN3B-201ENST00000248054 MROH2BQ7Z745 1585 aa22.78■■□□□ 1.24
SIN3B-201ENST00000248054 FAM50AQ14320 339 aaKnown RBP22.77■■□□□ 1.24
SIN3B-201ENST00000248054 SMARCA2P51531 1590 aa22.71■■□□□ 1.23
SIN3B-201ENST00000248054 DIEXFQ68CQ4 756 aaKnown RBP22.69■■□□□ 1.22
SIN3B-201ENST00000248054 GOLGA3Q08378 1498 aa22.67■■□□□ 1.22
SIN3B-201ENST00000248054 MYT1LQ9UL68 1186 aa22.61■■□□□ 1.21
SIN3B-201ENST00000248054 TOP2AP11388 1531 aaKnown RBP22.61■■□□□ 1.21
SIN3B-201ENST00000248054 FBLN2P98095 1184 aa22.6■■□□□ 1.21
SIN3B-201ENST00000248054 NEUROD1Q13562 356 aa22.6■■□□□ 1.21
SIN3B-201ENST00000248054 CCDC88BA6NC98 1476 aa22.56■■□□□ 1.2
SIN3B-201ENST00000248054 CLIP1P30622 1438 aa22.55■■□□□ 1.2
SIN3B-201ENST00000248054 KIF27Q86VH2 1401 aa22.55■■□□□ 1.2
SIN3B-201ENST00000248054 CEP164Q9UPV0 1460 aa22.54■■□□□ 1.2
SIN3B-201ENST00000248054 CDK11AQ9UQ88 783 aaPredicted RBP22.54■■□□□ 1.2
SIN3B-201ENST00000248054 P3H3Q8IVL6 736 aa22.53■■□□□ 1.2
SIN3B-201ENST00000248054 TNIKQ9UKE5 1360 aa22.52■■□□□ 1.2
SIN3B-201ENST00000248054 WIZO95785 1651 aa22.48■■□□□ 1.19
SIN3B-201ENST00000248054 CEP162Q5TB80 1403 aa22.48■■□□□ 1.19
SIN3B-201ENST00000248054 SMARCA4P51532 1647 aa22.47■■□□□ 1.19
SIN3B-201ENST00000248054 TRIM52Q96A61 297 aa22.47■■□□□ 1.19
SIN3B-201ENST00000248054 ATAD2BQ9ULI0 1458 aa22.33■■□□□ 1.17
SIN3B-201ENST00000248054 ZNF316A6NFI3 1004 aaPredicted RBP22.28■■□□□ 1.16
SIN3B-201ENST00000248054 POLR3GLQ9BT43 218 aa22.24■■□□□ 1.15
SIN3B-201ENST00000248054 SOGA1O94964 1423 aa22.21■■□□□ 1.15
SIN3B-201ENST00000248054 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
SIN3B-201ENST00000248054 CHMP7Q8WUX9 453 aaPredicted RBP22.21■■□□□ 1.15
SIN3B-201ENST00000248054 MTUS2Q5JR59 1369 aa22.21■■□□□ 1.15
SIN3B-201ENST00000248054 ARID3CA6NKF2 412 aa22.16■■□□□ 1.14
SIN3B-201ENST00000248054 PDS5BQ9NTI5 1447 aa22.16■■□□□ 1.14
SIN3B-201ENST00000248054 CUX2O14529 1486 aa22.15■■□□□ 1.14
SIN3B-201ENST00000248054 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
SIN3B-201ENST00000248054 CARMIL1Q5VZK9 1371 aa22.11■■□□□ 1.13
SIN3B-201ENST00000248054 ZNF777Q9ULD5 760 aaPredicted RBP22.09■■□□□ 1.13
SIN3B-201ENST00000248054 ERCC6Q03468 1493 aa22.09■■□□□ 1.13
SIN3B-201ENST00000248054 FHAD1B1AJZ9 1412 aa22.08■■□□□ 1.13
SIN3B-201ENST00000248054 DAXXQ9UER7 740 aaPredicted RBP22.08■■□□□ 1.12
SIN3B-201ENST00000248054 ANP32CO43423 234 aa22.04■■□□□ 1.12
SIN3B-201ENST00000248054 TONSLQ96HA7 1378 aa22.02■■□□□ 1.11
SIN3B-201ENST00000248054 BCL11AQ9H165 835 aa21.99■■□□□ 1.11
SIN3B-201ENST00000248054 VPS8Q8N3P4 1428 aa21.98■■□□□ 1.11
SIN3B-201ENST00000248054 NCAPD3P42695 1498 aa21.98■■□□□ 1.11
SIN3B-201ENST00000248054 NPM1P06748 294 aaKnown RBP eCLIP21.97■■□□□ 1.11
SIN3B-201ENST00000248054 ZNF326Q5BKZ1 582 aaKnown RBP21.93■■□□□ 1.1
SIN3B-201ENST00000248054 BCANQ96GW7 911 aa21.92■■□□□ 1.1
SIN3B-201ENST00000248054 TSPY4P0CV99 314 aa21.9■■□□□ 1.1
SIN3B-201ENST00000248054 TSPY10P0CW01 314 aa21.9■■□□□ 1.1
SIN3B-201ENST00000248054 ANP32EQ9BTT0 268 aa21.89■■□□□ 1.09
SIN3B-201ENST00000248054 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
SIN3B-201ENST00000248054 PLEKHD1A6NEE1 506 aa21.87■■□□□ 1.09
SIN3B-201ENST00000248054 CLSPNQ9HAW4 1339 aa21.84■■□□□ 1.09
SIN3B-201ENST00000248054 CHIC2Q9UKJ5 165 aa21.82■■□□□ 1.08
SIN3B-201ENST00000248054 RAPGEF2Q9Y4G8 1499 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms