RNA–Protein interactions for RNA: ENST00000247225.6

SGPP1-201, Transcript of sphingosine-1-phosphate phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SGPP1, Length 3,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGPP1-201ENST00000247225 NISCHQ9Y2I1 1504 aa32.31■■■□□ 2.76
SGPP1-201ENST00000247225 SHROOM4Q9ULL8 1493 aa29.52■■■□□ 2.32
SGPP1-201ENST00000247225 SUPT5HO00267 1087 aaKnown RBP29.28■■■□□ 2.28
SGPP1-201ENST00000247225 DCAF8L2P0C7V8 631 aa28.76■■■□□ 2.2
SGPP1-201ENST00000247225 PCGF6Q9BYE7 350 aa28.22■■■□□ 2.11
SGPP1-201ENST00000247225 PPARGC1BQ86YN6 1023 aaKnown RBP27.97■■■□□ 2.07
SGPP1-201ENST00000247225 CHIC1Q5VXU3 224 aa27.96■■■□□ 2.07
SGPP1-201ENST00000247225 HRCP23327 699 aa27.91■■■□□ 2.06
SGPP1-201ENST00000247225 MYO15BQ96JP2 1530 aa27.75■■■□□ 2.03
SGPP1-201ENST00000247225 LOC105371045A0A1W2PR82 267 aa27.75■■■□□ 2.03
SGPP1-201ENST00000247225 EHMT2Q96KQ7 1210 aa27.63■■■□□ 2.01
SGPP1-201ENST00000247225 FAM9AQ8IZU1 332 aaPredicted RBP27.31■■□□□ 1.96
SGPP1-201ENST00000247225 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
SGPP1-201ENST00000247225 TRIM26Q12899 539 aaPredicted RBP26.94■■□□□ 1.9
SGPP1-201ENST00000247225 TRIM41Q8WV44 630 aa26.82■■□□□ 1.88
SGPP1-201ENST00000247225 TTBK1Q5TCY1 1321 aaPredicted RBP26.73■■□□□ 1.87
SGPP1-201ENST00000247225 DCAF1Q9Y4B6 1507 aa26.58■■□□□ 1.85
SGPP1-201ENST00000247225 CCDC180Q9P1Z9 1646 aa26.46■■□□□ 1.83
SGPP1-201ENST00000247225 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.37■■□□□ 1.81
SGPP1-201ENST00000247225 ZEB1P37275 1124 aaPredicted RBP26.35■■□□□ 1.81
SGPP1-201ENST00000247225 SCAF1Q9H7N4 1312 aaKnown RBP26.27■■□□□ 1.8
SGPP1-201ENST00000247225 CCER1Q8TC90 406 aaPredicted RBP26.27■■□□□ 1.8
SGPP1-201ENST00000247225 RSF1Q96T23 1441 aaPredicted RBP26.07■■□□□ 1.76
SGPP1-201ENST00000247225 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
SGPP1-201ENST00000247225 YTHDC1Q96MU7 727 aaKnown RBP25.91■■□□□ 1.74
SGPP1-201ENST00000247225 NEUROD1Q13562 356 aa25.88■■□□□ 1.73
SGPP1-201ENST00000247225 RANGAP1P46060 587 aaPredicted RBP25.83■■□□□ 1.73
SGPP1-201ENST00000247225 RB1CC1Q8TDY2 1594 aa25.82■■□□□ 1.72
SGPP1-201ENST00000247225 DIEXFQ68CQ4 756 aaKnown RBP25.8■■□□□ 1.72
SGPP1-201ENST00000247225 PELP1Q8IZL8 1130 aaKnown RBP25.78■■□□□ 1.72
SGPP1-201ENST00000247225 GTF3C3Q9Y5Q9 886 aa25.78■■□□□ 1.72
SGPP1-201ENST00000247225 UBTFP17480 764 aaKnown RBP25.74■■□□□ 1.71
SGPP1-201ENST00000247225 ACIN1Q9UKV3 1341 aaKnown RBP25.72■■□□□ 1.71
SGPP1-201ENST00000247225 ABCC9O60706 1549 aa25.72■■□□□ 1.71
SGPP1-201ENST00000247225 CECR2Q9BXF3 1484 aa25.7■■□□□ 1.7
SGPP1-201ENST00000247225 CENPBP07199 599 aaPredicted RBP25.62■■□□□ 1.69
SGPP1-201ENST00000247225 HNRNPUL2Q1KMD3 747 aaKnown RBP25.61■■□□□ 1.69
SGPP1-201ENST00000247225 MROH2BQ7Z745 1585 aa25.43■■□□□ 1.66
SGPP1-201ENST00000247225 ZNF316A6NFI3 1004 aaPredicted RBP25.27■■□□□ 1.64
SGPP1-201ENST00000247225 WIZO95785 1651 aa25.26■■□□□ 1.63
SGPP1-201ENST00000247225 PABPN1Q86U42 306 aaKnown RBP eCLIP25.25■■□□□ 1.63
SGPP1-201ENST00000247225 MIER1Q8N108 512 aa25.23■■□□□ 1.63
SGPP1-201ENST00000247225 CSRNP3Q8WYN3 585 aa25.22■■□□□ 1.63
SGPP1-201ENST00000247225 ABCC8Q09428 1581 aa25.21■■□□□ 1.63
SGPP1-201ENST00000247225 APLP2Q06481 763 aa25.2■■□□□ 1.63
SGPP1-201ENST00000247225 SOGA1O94964 1423 aa25.2■■□□□ 1.63
SGPP1-201ENST00000247225 CCDC88BA6NC98 1476 aa25.18■■□□□ 1.62
SGPP1-201ENST00000247225 CEP162Q5TB80 1403 aa25.16■■□□□ 1.62
SGPP1-201ENST00000247225 RUSC2Q8N2Y8 1516 aa25.05■■□□□ 1.6
SGPP1-201ENST00000247225 ITGAEP38570 1179 aa25.02■■□□□ 1.6
SGPP1-201ENST00000247225 TNIKQ9UKE5 1360 aa24.85■■□□□ 1.57
SGPP1-201ENST00000247225 NACADO15069 1562 aa24.77■■□□□ 1.56
SGPP1-201ENST00000247225 BAZ1AQ9NRL2 1556 aaPredicted RBP24.7■■□□□ 1.54
SGPP1-201ENST00000247225 WRNQ14191 1432 aaPredicted RBP eCLIP24.69■■□□□ 1.54
SGPP1-201ENST00000247225 BCANQ96GW7 911 aa24.69■■□□□ 1.54
SGPP1-201ENST00000247225 CLIP1P30622 1438 aa24.67■■□□□ 1.54
SGPP1-201ENST00000247225 ATP1B4Q9UN42 357 aaPredicted RBP24.63■■□□□ 1.53
SGPP1-201ENST00000247225 GOLGA3Q08378 1498 aa24.62■■□□□ 1.53
SGPP1-201ENST00000247225 KANK4Q5T7N3 995 aaPredicted RBP24.53■■□□□ 1.52
SGPP1-201ENST00000247225 TOP2AP11388 1531 aaKnown RBP24.52■■□□□ 1.52
SGPP1-201ENST00000247225 KCNH8Q96L42 1107 aa24.51■■□□□ 1.51
SGPP1-201ENST00000247225 SMARCA2P51531 1590 aa24.5■■□□□ 1.51
SGPP1-201ENST00000247225 HIRIP3Q9BW71 556 aaPredicted RBP24.49■■□□□ 1.51
SGPP1-201ENST00000247225 MYT1Q01538 1121 aa24.44■■□□□ 1.5
SGPP1-201ENST00000247225 SUPT16HQ9Y5B9 1047 aaKnown RBP24.43■■□□□ 1.5
SGPP1-201ENST00000247225 EEA1Q15075 1411 aa24.43■■□□□ 1.5
SGPP1-201ENST00000247225 RAPGEF2Q9Y4G8 1499 aa24.41■■□□□ 1.5
SGPP1-201ENST00000247225 SMARCA4P51532 1647 aa24.4■■□□□ 1.5
SGPP1-201ENST00000247225 EIF4G1Q04637 1599 aaKnown RBP24.39■■□□□ 1.5
SGPP1-201ENST00000247225 CEP164Q9UPV0 1460 aa24.37■■□□□ 1.49
SGPP1-201ENST00000247225 P3H3Q8IVL6 736 aa24.36■■□□□ 1.49
SGPP1-201ENST00000247225 VPS8Q8N3P4 1428 aa24.35■■□□□ 1.49
SGPP1-201ENST00000247225 DDX10Q13206 875 aaKnown RBP24.35■■□□□ 1.49
SGPP1-201ENST00000247225 FAM50AQ14320 339 aaKnown RBP24.32■■□□□ 1.48
SGPP1-201ENST00000247225 SIN3AQ96ST3 1273 aa24.25■■□□□ 1.47
SGPP1-201ENST00000247225 DHX57Q6P158 1386 aaKnown RBP24.24■■□□□ 1.47
SGPP1-201ENST00000247225 FKBP8Q14318 412 aa24.24■■□□□ 1.47
SGPP1-201ENST00000247225 TRIM52Q96A61 297 aa24.23■■□□□ 1.47
SGPP1-201ENST00000247225 SYNJ1O43426 1573 aa24.19■■□□□ 1.46
SGPP1-201ENST00000247225 TSHZ2Q9NRE2 1034 aa24.16■■□□□ 1.46
SGPP1-201ENST00000247225 KIF21BO75037 1637 aa24.08■■□□□ 1.45
SGPP1-201ENST00000247225 NEFLP07196 543 aa24.06■■□□□ 1.44
SGPP1-201ENST00000247225 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
SGPP1-201ENST00000247225 CNGB1Q14028 1251 aaPredicted RBP24.05■■□□□ 1.44
SGPP1-201ENST00000247225 IRX6P78412 446 aaPredicted RBP24.02■■□□□ 1.44
SGPP1-201ENST00000247225 CCNB3Q8WWL7 1395 aa23.98■■□□□ 1.43
SGPP1-201ENST00000247225 RAB3GAP2Q9H2M9 1393 aa23.94■■□□□ 1.42
SGPP1-201ENST00000247225 ATAD2BQ9ULI0 1458 aa23.93■■□□□ 1.42
SGPP1-201ENST00000247225 ARAP1Q96P48 1450 aa23.92■■□□□ 1.42
SGPP1-201ENST00000247225 CLSPNQ9HAW4 1339 aa23.91■■□□□ 1.42
SGPP1-201ENST00000247225 ANP32CO43423 234 aa23.89■■□□□ 1.41
SGPP1-201ENST00000247225 ANP32EQ9BTT0 268 aa23.87■■□□□ 1.41
SGPP1-201ENST00000247225 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
SGPP1-201ENST00000247225 ARID3CA6NKF2 412 aa23.81■■□□□ 1.4
SGPP1-201ENST00000247225 SENP3-EIF4A1A0A087X0R7 540 aa23.79■■□□□ 1.4
SGPP1-201ENST00000247225 KIF27Q86VH2 1401 aa23.78■■□□□ 1.4
SGPP1-201ENST00000247225 HNRNPUQ00839 825 aaKnown RBP eCLIP23.76■■□□□ 1.39
SGPP1-201ENST00000247225 RBM19Q9Y4C8 960 aaKnown RBP23.74■■□□□ 1.39
SGPP1-201ENST00000247225 BICRAQ9NZM4 1560 aa23.73■■□□□ 1.39
SGPP1-201ENST00000247225 CHIC2Q9UKJ5 165 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms