RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 NISCHQ9Y2I1 1504 aa36.88■■■■□ 3.49
FOXA1-201ENST00000250448 CCDC180Q9P1Z9 1646 aa31.93■■■□□ 2.7
FOXA1-201ENST00000250448 ZCCHC6Q5VYS8 1495 aaKnown RBP30.97■■■□□ 2.55
FOXA1-201ENST00000250448 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
FOXA1-201ENST00000250448 SHROOM4Q9ULL8 1493 aa30.59■■■□□ 2.49
FOXA1-201ENST00000250448 ABCC9O60706 1549 aa30.54■■■□□ 2.48
FOXA1-201ENST00000250448 DCAF1Q9Y4B6 1507 aa30.27■■■□□ 2.44
FOXA1-201ENST00000250448 MYO15BQ96JP2 1530 aa29.83■■■□□ 2.37
FOXA1-201ENST00000250448 NACADO15069 1562 aa29.77■■■□□ 2.36
FOXA1-201ENST00000250448 SCRIBQ14160 1630 aa29.72■■■□□ 2.35
FOXA1-201ENST00000250448 RB1CC1Q8TDY2 1594 aa29.55■■■□□ 2.32
FOXA1-201ENST00000250448 SUPT5HO00267 1087 aaKnown RBP29.44■■■□□ 2.3
FOXA1-201ENST00000250448 UNC13AQ9UPW8 1703 aa29.07■■■□□ 2.24
FOXA1-201ENST00000250448 PABPN1Q86U42 306 aaKnown RBP eCLIP28.95■■■□□ 2.22
FOXA1-201ENST00000250448 CECR2Q9BXF3 1484 aa28.84■■■□□ 2.21
FOXA1-201ENST00000250448 BICRAQ9NZM4 1560 aa28.76■■■□□ 2.2
FOXA1-201ENST00000250448 RSF1Q96T23 1441 aaPredicted RBP28.72■■■□□ 2.19
FOXA1-201ENST00000250448 MROH2BQ7Z745 1585 aa28.62■■■□□ 2.17
FOXA1-201ENST00000250448 BAZ1AQ9NRL2 1556 aaPredicted RBP28.42■■■□□ 2.14
FOXA1-201ENST00000250448 WIZO95785 1651 aa28.41■■■□□ 2.14
FOXA1-201ENST00000250448 SMARCA4P51532 1647 aa28.34■■■□□ 2.13
FOXA1-201ENST00000250448 CHIC1Q5VXU3 224 aa28.17■■■□□ 2.1
FOXA1-201ENST00000250448 HRCP23327 699 aa27.98■■■□□ 2.07
FOXA1-201ENST00000250448 TOP2AP11388 1531 aaKnown RBP27.95■■■□□ 2.06
FOXA1-201ENST00000250448 EIF4G1Q04637 1599 aaKnown RBP27.89■■■□□ 2.06
FOXA1-201ENST00000250448 ATAD2BQ9ULI0 1458 aa27.88■■■□□ 2.05
FOXA1-201ENST00000250448 PEG3Q9GZU2 1588 aa27.84■■■□□ 2.05
FOXA1-201ENST00000250448 CCDC88BA6NC98 1476 aa27.79■■■□□ 2.04
FOXA1-201ENST00000250448 SMARCA2P51531 1590 aa27.76■■■□□ 2.03
FOXA1-201ENST00000250448 BAZ1BQ9UIG0 1483 aaKnown RBP27.75■■■□□ 2.03
FOXA1-201ENST00000250448 PCGF6Q9BYE7 350 aa27.66■■■□□ 2.02
FOXA1-201ENST00000250448 NCAPD3P42695 1498 aa27.54■■■□□ 2
FOXA1-201ENST00000250448 TRIM41Q8WV44 630 aa27.51■■□□□ 1.99
FOXA1-201ENST00000250448 CC2D2AQ9P2K1 1620 aa27.5■■□□□ 1.99
FOXA1-201ENST00000250448 HMGXB3Q12766 1538 aa27.45■■□□□ 1.99
FOXA1-201ENST00000250448 ABCC8Q09428 1581 aa27.35■■□□□ 1.97
FOXA1-201ENST00000250448 LOC105371045A0A1W2PR82 267 aa27.31■■□□□ 1.96
FOXA1-201ENST00000250448 PPARGC1BQ86YN6 1023 aaKnown RBP27.29■■□□□ 1.96
FOXA1-201ENST00000250448 FAM9AQ8IZU1 332 aaPredicted RBP27.25■■□□□ 1.95
FOXA1-201ENST00000250448 DNAJC5BQ9UF47 199 aa27.14■■□□□ 1.93
FOXA1-201ENST00000250448 TRIM26Q12899 539 aaPredicted RBP27.08■■□□□ 1.93
FOXA1-201ENST00000250448 EHMT2Q96KQ7 1210 aa27.06■■□□□ 1.92
FOXA1-201ENST00000250448 WRNQ14191 1432 aaPredicted RBP eCLIP27.03■■□□□ 1.92
FOXA1-201ENST00000250448 CFTRP13569 1480 aa26.99■■□□□ 1.91
FOXA1-201ENST00000250448 SYNJ1O43426 1573 aa26.95■■□□□ 1.9
FOXA1-201ENST00000250448 CADPSQ9ULU8 1353 aa26.92■■□□□ 1.9
FOXA1-201ENST00000250448 NESP48681 1621 aa26.86■■□□□ 1.89
FOXA1-201ENST00000250448 SOGA1O94964 1423 aa26.86■■□□□ 1.89
FOXA1-201ENST00000250448 RUSC2Q8N2Y8 1516 aa26.79■■□□□ 1.88
FOXA1-201ENST00000250448 PRDM2Q13029 1718 aa26.73■■□□□ 1.87
FOXA1-201ENST00000250448 CUX1P39880 1505 aa26.72■■□□□ 1.87
FOXA1-201ENST00000250448 TOP2BQ02880 1626 aa26.71■■□□□ 1.87
FOXA1-201ENST00000250448 ZEB1P37275 1124 aaPredicted RBP26.68■■□□□ 1.86
FOXA1-201ENST00000250448 FANCD2Q9BXW9 1451 aa26.67■■□□□ 1.86
FOXA1-201ENST00000250448 BIVM-ERCC5R4GMW8 1640 aa26.64■■□□□ 1.85
FOXA1-201ENST00000250448 CSRNP3Q8WYN3 585 aa26.58■■□□□ 1.85
FOXA1-201ENST00000250448 LAMC3Q9Y6N6 1575 aa26.56■■□□□ 1.84
FOXA1-201ENST00000250448 EEA1Q15075 1411 aa26.49■■□□□ 1.83
FOXA1-201ENST00000250448 CEP164Q9UPV0 1460 aa26.45■■□□□ 1.82
FOXA1-201ENST00000250448 FGD5Q6ZNL6 1462 aa26.43■■□□□ 1.82
FOXA1-201ENST00000250448 PDS5BQ9NTI5 1447 aa26.42■■□□□ 1.82
FOXA1-201ENST00000250448 KIF21AQ7Z4S6 1674 aa26.4■■□□□ 1.82
FOXA1-201ENST00000250448 UBTFP17480 764 aaKnown RBP26.38■■□□□ 1.81
FOXA1-201ENST00000250448 TOPBP1Q92547 1522 aa26.37■■□□□ 1.81
FOXA1-201ENST00000250448 URB2Q14146 1524 aaKnown RBP26.35■■□□□ 1.81
FOXA1-201ENST00000250448 DNMBPQ6XZF7 1577 aa26.35■■□□□ 1.81
FOXA1-201ENST00000250448 PELP1Q8IZL8 1130 aaKnown RBP26.31■■□□□ 1.8
FOXA1-201ENST00000250448 RAD54L2Q9Y4B4 1467 aa26.31■■□□□ 1.8
FOXA1-201ENST00000250448 CUX2O14529 1486 aa26.3■■□□□ 1.8
FOXA1-201ENST00000250448 KIF27Q86VH2 1401 aa26.29■■□□□ 1.8
FOXA1-201ENST00000250448 GOLGA3Q08378 1498 aa26.27■■□□□ 1.8
FOXA1-201ENST00000250448 POLA1P09884 1462 aaPredicted RBP26.27■■□□□ 1.8
FOXA1-201ENST00000250448 RAPGEF2Q9Y4G8 1499 aa26.26■■□□□ 1.79
FOXA1-201ENST00000250448 KIF21BO75037 1637 aa26.2■■□□□ 1.79
FOXA1-201ENST00000250448 TNIKQ9UKE5 1360 aa26.2■■□□□ 1.78
FOXA1-201ENST00000250448 RANGAP1P46060 587 aaPredicted RBP26.19■■□□□ 1.78
FOXA1-201ENST00000250448 CEP162Q5TB80 1403 aa26.17■■□□□ 1.78
FOXA1-201ENST00000250448 PRXQ9BXM0 1461 aa26.12■■□□□ 1.77
FOXA1-201ENST00000250448 IGF1RP08069 1367 aa26.12■■□□□ 1.77
FOXA1-201ENST00000250448 ERCC6Q03468 1493 aa26.1■■□□□ 1.77
FOXA1-201ENST00000250448 MRC2Q9UBG0 1479 aa26.09■■□□□ 1.77
FOXA1-201ENST00000250448 ABCA10Q8WWZ4 1543 aa26.08■■□□□ 1.77
FOXA1-201ENST00000250448 TDRD9Q8NDG6 1382 aaKnown RBP26.07■■□□□ 1.76
FOXA1-201ENST00000250448 SCAF1Q9H7N4 1312 aaKnown RBP26■■□□□ 1.75
FOXA1-201ENST00000250448 CARMIL1Q5VZK9 1371 aa25.99■■□□□ 1.75
FOXA1-201ENST00000250448 ERICH3Q5RHP9 1530 aa25.99■■□□□ 1.75
FOXA1-201ENST00000250448 WDR97A6NE52 1622 aa25.96■■□□□ 1.75
FOXA1-201ENST00000250448 CLIP1P30622 1438 aa25.94■■□□□ 1.74
FOXA1-201ENST00000250448 TARBP1Q13395 1621 aaKnown RBP25.93■■□□□ 1.74
FOXA1-201ENST00000250448 WDR62O43379 1518 aa25.91■■□□□ 1.74
FOXA1-201ENST00000250448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.89■■□□□ 1.74
FOXA1-201ENST00000250448 GAPVD1Q14C86 1478 aa25.89■■□□□ 1.73
FOXA1-201ENST00000250448 TTBK1Q5TCY1 1321 aaPredicted RBP25.87■■□□□ 1.73
FOXA1-201ENST00000250448 AQRO60306 1485 aaKnown RBP eCLIP25.87■■□□□ 1.732e-7■■■■■ 44
FOXA1-201ENST00000250448 CCER1Q8TC90 406 aaPredicted RBP25.87■■□□□ 1.73
FOXA1-201ENST00000250448 ABCA5Q8WWZ7 1642 aa25.86■■□□□ 1.73
FOXA1-201ENST00000250448 THOC2Q8NI27 1593 aaKnown RBP25.86■■□□□ 1.73
FOXA1-201ENST00000250448 ZNF608Q9ULD9 1512 aaPredicted RBP25.82■■□□□ 1.72
FOXA1-201ENST00000250448 MYT1Q01538 1121 aa25.77■■□□□ 1.72
FOXA1-201ENST00000250448 IFT140Q96RY7 1462 aa25.75■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms