Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.834e-10■□□□□ 10.8
U2AF1Q01081 ACVR1-206ENST00000424669 550 ntTSL 418.19■□□□□ 0.57e-8■□□□□ 10.8
U2AF1Q01081 GANAB-207ENST00000526732 824 ntTSL 216.7■□□□□ 0.264e-10■□□□□ 10.8
U2AF1Q01081 KEL-209ENST00000494148 417 ntTSL 315.51■□□□□ 0.074e-10■□□□□ 10.8
U2AF1Q01081 ACVR1-210ENST00000539637 564 ntTSL 414.54□□□□□ -0.087e-8■□□□□ 10.8
U2AF1Q01081 ACVR1-209ENST00000487456 563 ntTSL 413.71□□□□□ -0.217e-8■□□□□ 10.8
U2AF1Q01081 ACVR1-208ENST00000440523 534 ntTSL 311.47□□□□□ -0.577e-8■□□□□ 10.8
U2AF1Q01081 ACVR1-204ENST00000412025 531 ntTSL 310.38□□□□□ -0.757e-8■□□□□ 10.8
U2AF1Q01081 IARS-208ENST00000472894 651 ntTSL 39.11□□□□□ -0.957e-8■□□□□ 10.8
U2AF1Q01081 NMU-206ENST00000515325 616 ntTSL 36.71□□□□□ -1.347e-8■□□□□ 10.8
U2AF1Q01081 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC26.3■■□□□ 1.85e-10■□□□□ 10.8
U2AF1Q01081 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.245e-10■□□□□ 10.8
U2AF1Q01081 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC18.36■□□□□ 0.535e-10■□□□□ 10.8
U2AF1Q01081 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC16.65■□□□□ 0.265e-10■□□□□ 10.8
U2AF1Q01081 HSPA8-201ENST00000227378 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.135e-10■□□□□ 10.8
U2AF1Q01081 HSPA8-207ENST00000526110 1924 ntTSL 5 BASIC15.78■□□□□ 0.125e-10■□□□□ 10.8
U2AF1Q01081 HSPA8-218ENST00000532636 2306 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.285e-10■□□□□ 10.8
U2AF1Q01081 HSPA8-215ENST00000532091 2301 ntTSL 512.49□□□□□ -0.415e-10■□□□□ 10.8
U2AF1Q01081 ATXN2L-222ENST00000567024 525 ntTSL 323.43■■□□□ 1.343e-11■□□□□ 10.8
U2AF1Q01081 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC20.05■□□□□ 0.85e-6■□□□□ 10.8
U2AF1Q01081 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.675e-6■□□□□ 10.8
U2AF1Q01081 HMGCS1-201ENST00000325110 3506 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.255e-6■□□□□ 10.8
U2AF1Q01081 PHKB-208ENST00000566044 3829 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.175e-6■□□□□ 10.8
U2AF1Q01081 PHKB-202ENST00000323584 4283 ntTSL 1 (best) BASIC15.29■□□□□ 0.045e-6■□□□□ 10.8
U2AF1Q01081 HMGCS1-202ENST00000433297 3466 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.15e-6■□□□□ 10.8
U2AF1Q01081 ZNF337-201ENST00000252979 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.735e-6■□□□□ 10.8
U2AF1Q01081 PHKB-209ENST00000566275 1375 ntTSL 39.77□□□□□ -0.845e-6■□□□□ 10.8
U2AF1Q01081 POLG2-205ENST00000580490 510 ntTSL 39.53□□□□□ -0.885e-6■□□□□ 10.8
U2AF1Q01081 ZNF337-203ENST00000481610 572 ntTSL 39.01□□□□□ -0.975e-6■□□□□ 10.8
U2AF1Q01081 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC8.93□□□□□ -0.985e-6■□□□□ 10.8
U2AF1Q01081 PHKB-210ENST00000566319 3080 ntTSL 28.23□□□□□ -1.095e-6■□□□□ 10.8
U2AF1Q01081 RPS6KA3-205ENST00000479809 847 ntTSL 57.82□□□□□ -1.165e-6■□□□□ 10.8
U2AF1Q01081 LRCH3-212ENST00000466845 662 ntTSL 36.73□□□□□ -1.335e-6■□□□□ 10.8
U2AF1Q01081 POLG2-209ENST00000585104 271 ntTSL 35.57□□□□□ -1.525e-6■□□□□ 10.8
U2AF1Q01081 CRLS1-207ENST00000609154 977 ntTSL 1 (best)5.18□□□□□ -1.585e-6■□□□□ 10.8
U2AF1Q01081 CRLS1-206ENST00000489345 644 ntTSL 55.03□□□□□ -1.65e-6■□□□□ 10.8
U2AF1Q01081 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.33□□□□□ -1.725e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.791e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.41e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-215ENST00000556587 1863 ntTSL 1 (best)16.36■□□□□ 0.211e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-205ENST00000553635 1412 ntTSL 2 BASIC15.68■□□□□ 0.11e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-217ENST00000557154 1500 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.291e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-208ENST00000554929 947 ntTSL 213.12□□□□□ -0.311e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-212ENST00000556184 2443 ntTSL 1 (best)13.05□□□□□ -0.321e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-216ENST00000556647 644 ntTSL 212.71□□□□□ -0.371e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-213ENST00000556330 546 ntTSL 212.59□□□□□ -0.391e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-211ENST00000555547 2057 ntTSL 511.28□□□□□ -0.61e-6■□□□□ 10.8
U2AF1Q01081 SRSF5-207ENST00000554465 3044 ntTSL 1 (best)10.39□□□□□ -0.751e-6■□□□□ 10.8
U2AF1Q01081 PSME2-216ENST00000561103 460 ntTSL 315.38■□□□□ 0.051e-11■□□□□ 10.8
U2AF1Q01081 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC24.42■■□□□ 1.53e-10■□□□□ 10.8
U2AF1Q01081 ASGR1-206ENST00000573596 2083 ntTSL 524.02■■□□□ 1.443e-10■□□□□ 10.8
U2AF1Q01081 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC23.68■■□□□ 1.383e-10■□□□□ 10.8
U2AF1Q01081 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.73e-10■□□□□ 10.8
U2AF1Q01081 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC18.38■□□□□ 0.533e-10■□□□□ 10.8
U2AF1Q01081 ASGR1-205ENST00000573083 855 ntTSL 313.34□□□□□ -0.273e-10■□□□□ 10.8
U2AF1Q01081 CNOT1-218ENST00000569732 906 ntTSL 39.35□□□□□ -0.914e-12■□□□□ 10.8
U2AF1Q01081 CNOT1-219ENST00000569882 831 ntTSL 36.41□□□□□ -1.384e-12■□□□□ 10.8
U2AF1Q01081 CNOT1-203ENST00000562046 578 ntTSL 55.87□□□□□ -1.474e-12■□□□□ 10.8
U2AF1Q01081 HP1BP3-213ENST00000488722 639 ntTSL 58.97□□□□□ -0.971e-18■□□□□ 10.8
U2AF1Q01081 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.483e-7■□□□□ 10.8
U2AF1Q01081 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.713e-7■□□□□ 10.8
U2AF1Q01081 C6orf89-202ENST00000359359 2565 ntTSL 5 BASIC10.54□□□□□ -0.723e-7■□□□□ 10.8
U2AF1Q01081 MIR3064-201ENST00000581130 66 ntBASIC-0.08□□□□□ -2.424e-21■□□□□ 10.8
U2AF1Q01081 CEP57-211ENST00000539855 1739 ntTSL 519.68■□□□□ 0.741e-9■□□□□ 10.8
U2AF1Q01081 CEP57-212ENST00000540830 1936 ntTSL 1 (best)18.95■□□□□ 0.621e-9■□□□□ 10.8
U2AF1Q01081 CEP57-201ENST00000325486 3098 ntTSL 1 (best) BASIC12.58□□□□□ -0.41e-9■□□□□ 10.8
U2AF1Q01081 CEP57-202ENST00000325542 3178 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.411e-9■□□□□ 10.8
U2AF1Q01081 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.851e-9■□□□□ 10.8
U2AF1Q01081 CEP57-209ENST00000538158 2632 ntTSL 29.31□□□□□ -0.921e-9■□□□□ 10.8
U2AF1Q01081 CEP57-203ENST00000535224 760 ntTSL 36.49□□□□□ -1.371e-9■□□□□ 10.8
U2AF1Q01081 CEP57-206ENST00000537093 404 ntTSL 55.58□□□□□ -1.521e-9■□□□□ 10.8
U2AF1Q01081 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.981e-9■□□□□ 10.8
U2AF1Q01081 DDX39A-207ENST00000588542 1297 ntTSL 327.05■■□□□ 1.922e-6■□□□□ 10.7
U2AF1Q01081 DDX39A-209ENST00000589318 1903 ntTSL 1 (best)20.27■□□□□ 0.842e-6■□□□□ 10.7
U2AF1Q01081 DDX39A-217ENST00000592391 1080 ntTSL 519.43■□□□□ 0.72e-6■□□□□ 10.7
U2AF1Q01081 DDX39A-208ENST00000588692 1478 ntTSL 519.32■□□□□ 0.682e-6■□□□□ 10.7
U2AF1Q01081 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.542e-6■□□□□ 10.7
U2AF1Q01081 DDX39A-202ENST00000324340 1355 ntTSL 1 (best)16.88■□□□□ 0.292e-6■□□□□ 10.7
U2AF1Q01081 DDX39A-219ENST00000592927 823 ntTSL 315.78■□□□□ 0.122e-6■□□□□ 10.7
U2AF1Q01081 HNRNPH1-238ENST00000521116 806 ntTSL 428.43■■■□□ 2.142e-9■□□□□ 10.7
U2AF1Q01081 HNRNPH1-212ENST00000505087 592 ntTSL 323.54■■□□□ 1.362e-9■□□□□ 10.7
U2AF1Q01081 HNRNPH1-225ENST00000515158 850 ntTSL 420.81■□□□□ 0.922e-9■□□□□ 10.7
U2AF1Q01081 HNRNPH1-234ENST00000519707 582 ntTSL 217.91■□□□□ 0.462e-9■□□□□ 10.7
U2AF1Q01081 HNRNPH1-233ENST00000519455 451 ntTSL 417.81■□□□□ 0.442e-9■□□□□ 10.7
U2AF1Q01081 A2M-213ENST00000546069 593 ntTSL 58.91□□□□□ -0.983e-7■□□□□ 10.7
U2AF1Q01081 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC18.66■□□□□ 0.584e-43■□□□□ 10.7
U2AF1Q01081 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC22.3■■□□□ 1.168e-12■□□□□ 10.7
U2AF1Q01081 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC19.49■□□□□ 0.718e-12■□□□□ 10.7
U2AF1Q01081 FARP1-201ENST00000319562 10262 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.018e-12■□□□□ 10.7
U2AF1Q01081 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC28.09■■■□□ 2.098e-9■□□□□ 10.7
U2AF1Q01081 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.988e-9■□□□□ 10.7
U2AF1Q01081 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC24.59■■□□□ 1.538e-9■□□□□ 10.7
U2AF1Q01081 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.65■■□□□ 1.068e-9■□□□□ 10.7
U2AF1Q01081 EIF2B4-202ENST00000405940 1570 ntTSL 1 (best)21.55■■□□□ 1.048e-9■□□□□ 10.7
U2AF1Q01081 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC21.33■■□□□ 18e-9■□□□□ 10.7
U2AF1Q01081 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.948e-9■□□□□ 10.7
U2AF1Q01081 USP3-205ENST00000557884 958 ntTSL 319.2■□□□□ 0.668e-9■□□□□ 10.7
U2AF1Q01081 USP3-221ENST00000561442 542 ntTSL 519.2■□□□□ 0.668e-9■□□□□ 10.7
U2AF1Q01081 USP3-204ENST00000540797 5474 ntTSL 2 BASIC18.2■□□□□ 0.58e-9■□□□□ 10.7
U2AF1Q01081 USP3-202ENST00000380324 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.128e-9■□□□□ 10.7
Retrieved 100 of 10,096 protein–RNA pairs in 240.5 ms