RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
USP3-204ENST00000540797 NISCHQ9Y2I1 1504 aa24.65■■□□□ 1.54
USP3-204ENST00000540797 SUPT5HO00267 1087 aaKnown RBP23.7■■□□□ 1.38
USP3-204ENST00000540797 SHROOM4Q9ULL8 1493 aa23.5■■□□□ 1.35
USP3-204ENST00000540797 EHMT2Q96KQ7 1210 aa22.83■■□□□ 1.25
USP3-204ENST00000540797 APLP2Q06481 763 aa22.41■■□□□ 1.18
USP3-204ENST00000540797 FAM9AQ8IZU1 332 aaPredicted RBP22.33■■□□□ 1.17
USP3-204ENST00000540797 TRIM41Q8WV44 630 aa22.01■■□□□ 1.11
USP3-204ENST00000540797 RANGAP1P46060 587 aaPredicted RBP22.01■■□□□ 1.11
USP3-204ENST00000540797 TTBK1Q5TCY1 1321 aaPredicted RBP21.97■■□□□ 1.11
USP3-204ENST00000540797 ATP1B4Q9UN42 357 aaPredicted RBP21.84■■□□□ 1.09
USP3-204ENST00000540797 UBTFP17480 764 aaKnown RBP21.75■■□□□ 1.07
USP3-204ENST00000540797 PCGF6Q9BYE7 350 aa21.58■■□□□ 1.04
USP3-204ENST00000540797 ABCC9O60706 1549 aa21.53■■□□□ 1.04
USP3-204ENST00000540797 PELP1Q8IZL8 1130 aaKnown RBP21.38■■□□□ 1.01
USP3-204ENST00000540797 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.01
USP3-204ENST00000540797 CCER1Q8TC90 406 aaPredicted RBP21.33■■□□□ 1.01
USP3-204ENST00000540797 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.21■□□□□ 0.99
USP3-204ENST00000540797 HNRNPUL2Q1KMD3 747 aaKnown RBP21.21■□□□□ 0.99
USP3-204ENST00000540797 ZEB1P37275 1124 aaPredicted RBP21.17■□□□□ 0.98
USP3-204ENST00000540797 PPARGC1BQ86YN6 1023 aaKnown RBP21.16■□□□□ 0.98
USP3-204ENST00000540797 MYT1LQ9UL68 1186 aa21.12■□□□□ 0.97
USP3-204ENST00000540797 CHIC1Q5VXU3 224 aa20.96■□□□□ 0.95
USP3-204ENST00000540797 ITGAEP38570 1179 aa20.96■□□□□ 0.95
USP3-204ENST00000540797 LOC105371045A0A1W2PR82 267 aa20.9■□□□□ 0.94
USP3-204ENST00000540797 CENPBP07199 599 aaPredicted RBP20.83■□□□□ 0.92
USP3-204ENST00000540797 TRIM26Q12899 539 aaPredicted RBP20.81■□□□□ 0.92
USP3-204ENST00000540797 FBLN2P98095 1184 aa20.66■□□□□ 0.9
USP3-204ENST00000540797 POLR3GLQ9BT43 218 aa20.62■□□□□ 0.89
USP3-204ENST00000540797 YTHDC1Q96MU7 727 aaKnown RBP20.57■□□□□ 0.88
USP3-204ENST00000540797 NEFLP07196 543 aa20.54■□□□□ 0.88
USP3-204ENST00000540797 FAM50AQ14320 339 aaKnown RBP20.52■□□□□ 0.87
USP3-204ENST00000540797 SCRIBQ14160 1630 aa20.5■□□□□ 0.87
USP3-204ENST00000540797 ERICH6Q7L0X2 663 aa20.43■□□□□ 0.86
USP3-204ENST00000540797 TRIM52Q96A61 297 aa20.38■□□□□ 0.85
USP3-204ENST00000540797 CNGB1Q14028 1251 aaPredicted RBP20.36■□□□□ 0.85
USP3-204ENST00000540797 ZCCHC6Q5VYS8 1495 aaKnown RBP20.35■□□□□ 0.85
USP3-204ENST00000540797 SLC4A1APQ9BWU0 796 aaKnown RBP20.35■□□□□ 0.85
USP3-204ENST00000540797 CCDC180Q9P1Z9 1646 aa20.3■□□□□ 0.84
USP3-204ENST00000540797 P3H3Q8IVL6 736 aa20.28■□□□□ 0.84
USP3-204ENST00000540797 HRCP23327 699 aa20.27■□□□□ 0.84
USP3-204ENST00000540797 CSRNP3Q8WYN3 585 aa20.25■□□□□ 0.83
USP3-204ENST00000540797 ARID3CA6NKF2 412 aa20.24■□□□□ 0.83
USP3-204ENST00000540797 NEUROD1Q13562 356 aa20.16■□□□□ 0.82
USP3-204ENST00000540797 RB1CC1Q8TDY2 1594 aa20.11■□□□□ 0.81
USP3-204ENST00000540797 ZNF326Q5BKZ1 582 aaKnown RBP20.07■□□□□ 0.8
USP3-204ENST00000540797 CDK11AQ9UQ88 783 aaPredicted RBP20.07■□□□□ 0.8
USP3-204ENST00000540797 ZNF777Q9ULD5 760 aaPredicted RBP20.06■□□□□ 0.8
USP3-204ENST00000540797 NPM1P06748 294 aaKnown RBP eCLIP19.98■□□□□ 0.79
USP3-204ENST00000540797 BCANQ96GW7 911 aa19.96■□□□□ 0.79
USP3-204ENST00000540797 ESF1Q9H501 851 aaKnown RBP19.89■□□□□ 0.77
USP3-204ENST00000540797 DIEXFQ68CQ4 756 aaKnown RBP19.88■□□□□ 0.77
USP3-204ENST00000540797 DAXXQ9UER7 740 aaPredicted RBP19.87■□□□□ 0.77
USP3-204ENST00000540797 NACADO15069 1562 aa19.87■□□□□ 0.77
USP3-204ENST00000540797 CHMP7Q8WUX9 453 aaPredicted RBP19.85■□□□□ 0.77
USP3-204ENST00000540797 ANP32CO43423 234 aa19.73■□□□□ 0.75
USP3-204ENST00000540797 PLPPR3Q6T4P5 718 aa19.71■□□□□ 0.75
USP3-204ENST00000540797 STAG3Q9UJ98 1225 aa19.71■□□□□ 0.75
USP3-204ENST00000540797 CHGAP10645 457 aaKnown RBP19.7■□□□□ 0.74
USP3-204ENST00000540797 BAZ1BQ9UIG0 1483 aaKnown RBP19.69■□□□□ 0.74
USP3-204ENST00000540797 CLSPNQ9HAW4 1339 aa19.68■□□□□ 0.74
USP3-204ENST00000540797 RSF1Q96T23 1441 aaPredicted RBP19.66■□□□□ 0.74
USP3-204ENST00000540797 SLC24A1O60721 1099 aa19.62■□□□□ 0.73
USP3-204ENST00000540797 CHIC2Q9UKJ5 165 aa19.6■□□□□ 0.73
USP3-204ENST00000540797 NEFMP07197 916 aa19.6■□□□□ 0.73
USP3-204ENST00000540797 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.58■□□□□ 0.731e-8■■■□□ 15.2
USP3-204ENST00000540797 TSPY4P0CV99 314 aa19.58■□□□□ 0.72
USP3-204ENST00000540797 TSPY10P0CW01 314 aa19.58■□□□□ 0.72
USP3-204ENST00000540797 MTUS2Q5JR59 1369 aa19.57■□□□□ 0.72
USP3-204ENST00000540797 ZNF316A6NFI3 1004 aaPredicted RBP19.56■□□□□ 0.72
USP3-204ENST00000540797 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
USP3-204ENST00000540797 TONSLQ96HA7 1378 aa19.52■□□□□ 0.72
USP3-204ENST00000540797 KCNH8Q96L42 1107 aa19.5■□□□□ 0.71
USP3-204ENST00000540797 WRNQ14191 1432 aaPredicted RBP eCLIP19.5■□□□□ 0.71
USP3-204ENST00000540797 CLIP1P30622 1438 aa19.48■□□□□ 0.71
USP3-204ENST00000540797 ZBTB47Q9UFB7 747 aaPredicted RBP19.48■□□□□ 0.71
USP3-204ENST00000540797 PLEKHD1A6NEE1 506 aa19.45■□□□□ 0.7
USP3-204ENST00000540797 CANXP27824 592 aaKnown RBP19.44■□□□□ 0.7
USP3-204ENST00000540797 BAZ1AQ9NRL2 1556 aaPredicted RBP19.44■□□□□ 0.7
USP3-204ENST00000540797 DCAF1Q9Y4B6 1507 aa19.43■□□□□ 0.7
USP3-204ENST00000540797 EEA1Q15075 1411 aa19.42■□□□□ 0.7
USP3-204ENST00000540797 KIF27Q86VH2 1401 aa19.41■□□□□ 0.7
USP3-204ENST00000540797 GOLGA3Q08378 1498 aa19.37■□□□□ 0.69
USP3-204ENST00000540797 CECR2Q9BXF3 1484 aa19.36■□□□□ 0.69
USP3-204ENST00000540797 BCL11AQ9H165 835 aa19.33■□□□□ 0.69
USP3-204ENST00000540797 KDM2AQ9Y2K7 1162 aa19.32■□□□□ 0.68
USP3-204ENST00000540797 RRP7BPQ9NSQ0 103 aa19.31■□□□□ 0.68
USP3-204ENST00000540797 CEP162Q5TB80 1403 aa19.25■□□□□ 0.67
USP3-204ENST00000540797 CFDP1Q9UEE9 299 aaPredicted RBP19.25■□□□□ 0.67
USP3-204ENST00000540797 ARID4BQ4LE39 1312 aaPredicted RBP19.24■□□□□ 0.67
USP3-204ENST00000540797 PPP1R15AO75807 674 aaPredicted RBP19.22■□□□□ 0.67
USP3-204ENST00000540797 CEP164Q9UPV0 1460 aa19.21■□□□□ 0.67
USP3-204ENST00000540797 DDX10Q13206 875 aaKnown RBP19.2■□□□□ 0.66
USP3-204ENST00000540797 SENP3Q9H4L4 574 aaPredicted RBP19.18■□□□□ 0.66
USP3-204ENST00000540797 RTL5Q5HYW3 569 aaPredicted RBP19.18■□□□□ 0.66
USP3-204ENST00000540797 SCAF1Q9H7N4 1312 aaKnown RBP19.15■□□□□ 0.66
USP3-204ENST00000540797 TNIKQ9UKE5 1360 aa19.15■□□□□ 0.66
USP3-204ENST00000540797 CUX2O14529 1486 aa19.14■□□□□ 0.65
USP3-204ENST00000540797 GTF3C3Q9Y5Q9 886 aa19.14■□□□□ 0.65
USP3-204ENST00000540797 FAM9BQ8IZU0 186 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms