RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 NISCHQ9Y2I1 1504 aa29.51■■■□□ 2.31
DDX39A-202ENST00000324340 CCDC180Q9P1Z9 1646 aa25.92■■□□□ 1.74
DDX39A-202ENST00000324340 ZCCHC6Q5VYS8 1495 aaKnown RBP24.75■■□□□ 1.55
DDX39A-202ENST00000324340 ABCC9O60706 1549 aa24.54■■□□□ 1.52
DDX39A-202ENST00000324340 DCAF1Q9Y4B6 1507 aa24.48■■□□□ 1.51
DDX39A-202ENST00000324340 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
DDX39A-202ENST00000324340 DCAF8L2P0C7V8 631 aa24.21■■□□□ 1.47
DDX39A-202ENST00000324340 NACADO15069 1562 aa24.16■■□□□ 1.46
DDX39A-202ENST00000324340 RB1CC1Q8TDY2 1594 aa23.98■■□□□ 1.43
DDX39A-202ENST00000324340 SHROOM4Q9ULL8 1493 aa23.7■■□□□ 1.38
DDX39A-202ENST00000324340 SCRIBQ14160 1630 aa23.66■■□□□ 1.38
DDX39A-202ENST00000324340 UNC13AQ9UPW8 1703 aa23.49■■□□□ 1.35
DDX39A-202ENST00000324340 BICRAQ9NZM4 1560 aa23.26■■□□□ 1.31
DDX39A-202ENST00000324340 PABPN1Q86U42 306 aaKnown RBP eCLIP23.04■■□□□ 1.281e-10■■■■■ 41
DDX39A-202ENST00000324340 CECR2Q9BXF3 1484 aa22.88■■□□□ 1.25
DDX39A-202ENST00000324340 BAZ1AQ9NRL2 1556 aaPredicted RBP22.81■■□□□ 1.24
DDX39A-202ENST00000324340 RSF1Q96T23 1441 aaPredicted RBP22.77■■□□□ 1.24
DDX39A-202ENST00000324340 MROH2BQ7Z745 1585 aa22.74■■□□□ 1.23
DDX39A-202ENST00000324340 SMARCA4P51532 1647 aa22.74■■□□□ 1.23
DDX39A-202ENST00000324340 SUPT5HO00267 1087 aaKnown RBP22.68■■□□□ 1.22
DDX39A-202ENST00000324340 EIF4G1Q04637 1599 aaKnown RBP22.56■■□□□ 1.2
DDX39A-202ENST00000324340 WIZO95785 1651 aa22.54■■□□□ 1.2
DDX39A-202ENST00000324340 PEG3Q9GZU2 1588 aa22.53■■□□□ 1.2
DDX39A-202ENST00000324340 DNAJC5BQ9UF47 199 aa22.41■■□□□ 1.18
DDX39A-202ENST00000324340 SMARCA2P51531 1590 aa22.41■■□□□ 1.18
DDX39A-202ENST00000324340 ATAD2BQ9ULI0 1458 aa22.4■■□□□ 1.18
DDX39A-202ENST00000324340 TOP2AP11388 1531 aaKnown RBP22.35■■□□□ 1.17
DDX39A-202ENST00000324340 NCAPD3P42695 1498 aa22.28■■□□□ 1.16
DDX39A-202ENST00000324340 CC2D2AQ9P2K1 1620 aa22.28■■□□□ 1.16
DDX39A-202ENST00000324340 HMGXB3Q12766 1538 aa22.26■■□□□ 1.15
DDX39A-202ENST00000324340 BAZ1BQ9UIG0 1483 aaKnown RBP22.24■■□□□ 1.15
DDX39A-202ENST00000324340 CCDC88BA6NC98 1476 aa22.07■■□□□ 1.12
DDX39A-202ENST00000324340 CFTRP13569 1480 aa21.71■■□□□ 1.07
DDX39A-202ENST00000324340 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
DDX39A-202ENST00000324340 CADPSQ9ULU8 1353 aa21.66■■□□□ 1.06
DDX39A-202ENST00000324340 PRDM2Q13029 1718 aa21.64■■□□□ 1.05
DDX39A-202ENST00000324340 LAMC3Q9Y6N6 1575 aa21.57■■□□□ 1.04
DDX39A-202ENST00000324340 ABCC8Q09428 1581 aa21.5■■□□□ 1.03
DDX39A-202ENST00000324340 NESP48681 1621 aa21.48■■□□□ 1.03
DDX39A-202ENST00000324340 WRNQ14191 1432 aaPredicted RBP eCLIP21.42■■□□□ 1.021e-9■■■■■ 51
DDX39A-202ENST00000324340 TRIM41Q8WV44 630 aa21.41■■□□□ 1.02
DDX39A-202ENST00000324340 FANCD2Q9BXW9 1451 aa21.4■■□□□ 1.02
DDX39A-202ENST00000324340 PDS5BQ9NTI5 1447 aa21.36■■□□□ 1.01
DDX39A-202ENST00000324340 SYNJ1O43426 1573 aa21.36■■□□□ 1.01
DDX39A-202ENST00000324340 BIVM-ERCC5R4GMW8 1640 aa21.33■■□□□ 1.01
DDX39A-202ENST00000324340 TOP2BQ02880 1626 aa21.32■■□□□ 1
DDX39A-202ENST00000324340 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
DDX39A-202ENST00000324340 CUX1P39880 1505 aa21.3■■□□□ 1
DDX39A-202ENST00000324340 KIF21AQ7Z4S6 1674 aa21.28■■□□□ 1
DDX39A-202ENST00000324340 DNMBPQ6XZF7 1577 aa21.21■□□□□ 0.99
DDX39A-202ENST00000324340 URB2Q14146 1524 aaKnown RBP21.16■□□□□ 0.98
DDX39A-202ENST00000324340 TOPBP1Q92547 1522 aa21.16■□□□□ 0.98
DDX39A-202ENST00000324340 MRC2Q9UBG0 1479 aa21.11■□□□□ 0.97
DDX39A-202ENST00000324340 FGD5Q6ZNL6 1462 aa21.09■□□□□ 0.97
DDX39A-202ENST00000324340 ERCC6Q03468 1493 aa21.07■□□□□ 0.96
DDX39A-202ENST00000324340 WDR62O43379 1518 aa21.05■□□□□ 0.96
DDX39A-202ENST00000324340 SOGA1O94964 1423 aa21.04■□□□□ 0.96
DDX39A-202ENST00000324340 EEA1Q15075 1411 aa21.04■□□□□ 0.96
DDX39A-202ENST00000324340 THOC2Q8NI27 1593 aaKnown RBP21.03■□□□□ 0.96
DDX39A-202ENST00000324340 POLA1P09884 1462 aaPredicted RBP21.02■□□□□ 0.96
DDX39A-202ENST00000324340 RUSC2Q8N2Y8 1516 aa20.97■□□□□ 0.95
DDX39A-202ENST00000324340 ABCA10Q8WWZ4 1543 aa20.94■□□□□ 0.94
DDX39A-202ENST00000324340 WDR97A6NE52 1622 aa20.92■□□□□ 0.94
DDX39A-202ENST00000324340 RAD54L2Q9Y4B4 1467 aa20.91■□□□□ 0.94
DDX39A-202ENST00000324340 FAM9AQ8IZU1 332 aaPredicted RBP20.91■□□□□ 0.94
DDX39A-202ENST00000324340 KIF27Q86VH2 1401 aa20.91■□□□□ 0.94
DDX39A-202ENST00000324340 TARBP1Q13395 1621 aaKnown RBP20.9■□□□□ 0.94
DDX39A-202ENST00000324340 CUX2O14529 1486 aa20.89■□□□□ 0.93
DDX39A-202ENST00000324340 CSRNP3Q8WYN3 585 aa20.86■□□□□ 0.93
DDX39A-202ENST00000324340 IFT140Q96RY7 1462 aa20.82■□□□□ 0.92
DDX39A-202ENST00000324340 ABCA5Q8WWZ7 1642 aa20.8■□□□□ 0.92
DDX39A-202ENST00000324340 KIF21BO75037 1637 aa20.79■□□□□ 0.92
DDX39A-202ENST00000324340 LOC105371045A0A1W2PR82 267 aa20.76■□□□□ 0.91
DDX39A-202ENST00000324340 IGF1RP08069 1367 aa20.74■□□□□ 0.91
DDX39A-202ENST00000324340 PRXQ9BXM0 1461 aa20.74■□□□□ 0.91
DDX39A-202ENST00000324340 GAPVD1Q14C86 1478 aa20.72■□□□□ 0.91
DDX39A-202ENST00000324340 TDRD9Q8NDG6 1382 aaKnown RBP20.71■□□□□ 0.91
DDX39A-202ENST00000324340 ERICH3Q5RHP9 1530 aa20.7■□□□□ 0.9
DDX39A-202ENST00000324340 GOLGA3Q08378 1498 aa20.7■□□□□ 0.9
DDX39A-202ENST00000324340 ZNF608Q9ULD9 1512 aaPredicted RBP20.67■□□□□ 0.9
DDX39A-202ENST00000324340 CUL7Q14999 1698 aa20.67■□□□□ 0.9
DDX39A-202ENST00000324340 PBRM1Q86U86 1689 aa20.65■□□□□ 0.9
DDX39A-202ENST00000324340 AQRO60306 1485 aaKnown RBP eCLIP20.64■□□□□ 0.891e-7■■■■■ 30.6
DDX39A-202ENST00000324340 RAPGEF2Q9Y4G8 1499 aa20.64■□□□□ 0.89
DDX39A-202ENST00000324340 EIF4G3O43432 1585 aaKnown RBP20.64■□□□□ 0.89
DDX39A-202ENST00000324340 CARMIL1Q5VZK9 1371 aa20.62■□□□□ 0.89
DDX39A-202ENST00000324340 DNAJC5Q9H3Z4 198 aa20.61■□□□□ 0.89
DDX39A-202ENST00000324340 GRIN2BQ13224 1484 aa20.61■□□□□ 0.89
DDX39A-202ENST00000324340 TNIKQ9UKE5 1360 aa20.59■□□□□ 0.89
DDX39A-202ENST00000324340 EHMT2Q96KQ7 1210 aa20.55■□□□□ 0.88
DDX39A-202ENST00000324340 ADAMTS12P58397 1594 aa20.53■□□□□ 0.88
DDX39A-202ENST00000324340 UBTFP17480 764 aaKnown RBP20.5■□□□□ 0.87
DDX39A-202ENST00000324340 FHAD1B1AJZ9 1412 aa20.5■□□□□ 0.87
DDX39A-202ENST00000324340 MAGI1Q96QZ7 1491 aaPredicted RBP20.49■□□□□ 0.87
DDX39A-202ENST00000324340 SNAPC4Q5SXM2 1469 aa20.47■□□□□ 0.87
DDX39A-202ENST00000324340 CEP162Q5TB80 1403 aa20.43■□□□□ 0.86
DDX39A-202ENST00000324340 SYNJ2O15056 1496 aa20.39■□□□□ 0.85
DDX39A-202ENST00000324340 CTTNBP2Q8WZ74 1663 aa20.38■□□□□ 0.85
DDX39A-202ENST00000324340 GRIN2AQ12879 1464 aa20.35■□□□□ 0.85
DDX39A-202ENST00000324340 CLIP1P30622 1438 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms