RNA–Protein interactions for RNA: ENST00000466845.1

LRCH3-212, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 662 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-212ENST00000466845 AEBP2Q6ZN18 517 aaPredicted RBP25.43■■□□□ 1.66
LRCH3-212ENST00000466845 CHIC1Q5VXU3 224 aa24.71■■□□□ 1.55
LRCH3-212ENST00000466845 SENP3Q9H4L4 574 aaPredicted RBP21.83■■□□□ 1.09
LRCH3-212ENST00000466845 PHF23Q9BUL5 403 aaPredicted RBP21.59■■□□□ 1.05
LRCH3-212ENST00000466845 FOXD1Q16676 465 aa20.16■□□□□ 0.82
LRCH3-212ENST00000466845 PLPPR3Q6T4P5 718 aa20.01■□□□□ 0.79
LRCH3-212ENST00000466845 PPP6R1Q9UPN7 881 aa19.11■□□□□ 0.65
LRCH3-212ENST00000466845 ADRA2BP18089 450 aa19.09■□□□□ 0.65
LRCH3-212ENST00000466845 PIAS4Q8N2W9 510 aaPredicted RBP18.97■□□□□ 0.63
LRCH3-212ENST00000466845 MSH5O43196 834 aa18.87■□□□□ 0.61
LRCH3-212ENST00000466845 SCAF1Q9H7N4 1312 aaKnown RBP17.73■□□□□ 0.43
LRCH3-212ENST00000466845 POTEDQ86YR6 584 aa17.53■□□□□ 0.4
LRCH3-212ENST00000466845 PPP4R3CPQ6ZMV5 832 aa17.52■□□□□ 0.4
LRCH3-212ENST00000466845 MAPK8IP2Q13387 824 aaPredicted RBP17.37■□□□□ 0.37
LRCH3-212ENST00000466845 DMRT2Q9Y5R5 561 aa17.35■□□□□ 0.37
LRCH3-212ENST00000466845 CNKSR2Q8WXI2 1034 aa17.16■□□□□ 0.34
LRCH3-212ENST00000466845 NCBP3Q53F19 620 aaKnown RBP17.12■□□□□ 0.33
LRCH3-212ENST00000466845 RNF216Q9NWF9 866 aaPredicted RBP16.91■□□□□ 0.3
LRCH3-212ENST00000466845 HOXD11P31277 338 aaPredicted RBP16.89■□□□□ 0.29
LRCH3-212ENST00000466845 KCNA4P22459 653 aa16.7■□□□□ 0.26
LRCH3-212ENST00000466845 NPM3O75607 178 aaKnown RBP16.69■□□□□ 0.26
LRCH3-212ENST00000466845 DCAF8L1A6NGE4 600 aa16.52■□□□□ 0.24
LRCH3-212ENST00000466845 DNAJC5BQ9UF47 199 aa16.46■□□□□ 0.23
LRCH3-212ENST00000466845 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.08■□□□□ 0.16
LRCH3-212ENST00000466845 RNF39Q9H2S5 420 aa16.05■□□□□ 0.16
LRCH3-212ENST00000466845 C1QBPQ07021 282 aaKnown RBP15.95■□□□□ 0.14
LRCH3-212ENST00000466845 SLC4A1APQ9BWU0 796 aaKnown RBP15.93■□□□□ 0.14
LRCH3-212ENST00000466845 CACNB1Q02641 598 aaPredicted RBP15.84■□□□□ 0.13
LRCH3-212ENST00000466845 SLC4A2P04920 1241 aa15.8■□□□□ 0.12
LRCH3-212ENST00000466845 U3KPZ7 1027 aaPredicted RBP15.71■□□□□ 0.11
LRCH3-212ENST00000466845 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.65■□□□□ 0.1
LRCH3-212ENST00000466845 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
LRCH3-212ENST00000466845 APLP2Q06481 763 aa15.59■□□□□ 0.09
LRCH3-212ENST00000466845 FOXD4L1Q9NU39 408 aa15.57■□□□□ 0.08
LRCH3-212ENST00000466845 MYCNP04198 464 aaPredicted RBP15.52■□□□□ 0.08
LRCH3-212ENST00000466845 SAMD1Q6SPF0 538 aaPredicted RBP15.52■□□□□ 0.08
LRCH3-212ENST00000466845 CAPN15O75808 1086 aa15.34■□□□□ 0.05
LRCH3-212ENST00000466845 SPINK5Q9NQ38 1064 aaPredicted RBP15.3■□□□□ 0.04
LRCH3-212ENST00000466845 ZBTB22O15209 634 aa15.29■□□□□ 0.04
LRCH3-212ENST00000466845 ZNF219Q9P2Y4 722 aaPredicted RBP15.29■□□□□ 0.04
LRCH3-212ENST00000466845 TRHP20396 242 aaPredicted RBP15.17■□□□□ 0.02
LRCH3-212ENST00000466845 ATXN8OSP0DMR3 200 aa15.16■□□□□ 0.02
LRCH3-212ENST00000466845 DSG3P32926 999 aa15.16■□□□□ 0.02
LRCH3-212ENST00000466845 CSRNP3Q8WYN3 585 aa15.06■□□□□ 0
LRCH3-212ENST00000466845 EHMT2Q96KQ7 1210 aa15.02■□□□□ -0
LRCH3-212ENST00000466845 ATF5Q9Y2D1 282 aaPredicted RBP14.94□□□□□ -0.02
LRCH3-212ENST00000466845 ABCB7O75027 752 aa14.93□□□□□ -0.02
LRCH3-212ENST00000466845 POLA2Q14181 598 aa14.89□□□□□ -0.03
LRCH3-212ENST00000466845 ZBTB12Q9Y330 459 aaPredicted RBP14.8□□□□□ -0.04
LRCH3-212ENST00000466845 RBM42Q9BTD8 480 aaKnown RBP14.6□□□□□ -0.07
LRCH3-212ENST00000466845 FBLN2P98095 1184 aa14.56□□□□□ -0.08
LRCH3-212ENST00000466845 OSCARQ8IYS5 282 aa14.34□□□□□ -0.11
LRCH3-212ENST00000466845 MKRN4PQ13434 485 aaPredicted RBP14.32□□□□□ -0.12
LRCH3-212ENST00000466845 SPDYE2BA6NHP3 402 aa14.31□□□□□ -0.12
LRCH3-212ENST00000466845 SPDYE6P0CI01 402 aa14.31□□□□□ -0.12
LRCH3-212ENST00000466845 SPDYE2Q495Y8 402 aa14.31□□□□□ -0.12
LRCH3-212ENST00000466845 AKT1S1Q96B36 256 aa14.31□□□□□ -0.12
LRCH3-212ENST00000466845 ZNF692Q9BU19 519 aaPredicted RBP14.15□□□□□ -0.14
LRCH3-212ENST00000466845 SSUH2Q9Y2M2 353 aa14.1□□□□□ -0.15
LRCH3-212ENST00000466845 REM2Q8IYK8 340 aaPredicted RBP14.09□□□□□ -0.15
LRCH3-212ENST00000466845 CHRDL2Q6WN34 429 aa13.98□□□□□ -0.17
LRCH3-212ENST00000466845 SPDYE4A6NLX3 237 aa13.96□□□□□ -0.17
LRCH3-212ENST00000466845 SPDYE1Q8NFV5 336 aaPredicted RBP13.96□□□□□ -0.17
LRCH3-212ENST00000466845 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
LRCH3-212ENST00000466845 PITPNM1O00562 1244 aa13.89□□□□□ -0.19
LRCH3-212ENST00000466845 POTEHQ6S545 545 aa13.86□□□□□ -0.19
LRCH3-212ENST00000466845 STAG3Q9UJ98 1225 aa13.8□□□□□ -0.2
LRCH3-212ENST00000466845 CLEC11AQ9Y240 323 aa13.79□□□□□ -0.2
LRCH3-212ENST00000466845 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
LRCH3-212ENST00000466845 PRR29P0C7W0 189 aa13.71□□□□□ -0.21
LRCH3-212ENST00000466845 PIP4P2Q8N4L2 257 aa13.71□□□□□ -0.21
LRCH3-212ENST00000466845 PROM2Q8N271 834 aa13.7□□□□□ -0.22
LRCH3-212ENST00000466845 FKBP8Q14318 412 aa13.64□□□□□ -0.23
LRCH3-212ENST00000466845 PRKAR2AP13861 404 aaKnown RBP13.57□□□□□ -0.24
LRCH3-212ENST00000466845 FBXO3Q9UK99 471 aa13.43□□□□□ -0.26
LRCH3-212ENST00000466845 CHADLQ6NUI6 762 aa13.41□□□□□ -0.26
LRCH3-212ENST00000466845 CREBZFQ9NS37 354 aa13.39□□□□□ -0.27
LRCH3-212ENST00000466845 HAX1O00165 279 aa13.38□□□□□ -0.27
LRCH3-212ENST00000466845 PLEKHG5O94827 1062 aa13.38□□□□□ -0.27
LRCH3-212ENST00000466845 FARP1Q9Y4F1 1045 aaPredicted RBP13.38□□□□□ -0.27
LRCH3-212ENST00000466845 NPM1P06748 294 aaKnown RBP eCLIP13.31□□□□□ -0.28
LRCH3-212ENST00000466845 C19orf67A6NJJ6 358 aa13.29□□□□□ -0.28
LRCH3-212ENST00000466845 MIER1Q8N108 512 aa13.29□□□□□ -0.28
LRCH3-212ENST00000466845 ZBTB47Q9UFB7 747 aaPredicted RBP13.25□□□□□ -0.29
LRCH3-212ENST00000466845 PLCD3Q8N3E9 789 aa13.24□□□□□ -0.29
LRCH3-212ENST00000466845 SP7Q8TDD2 431 aaPredicted RBP13.22□□□□□ -0.29
LRCH3-212ENST00000466845 MNX1P50219 401 aaPredicted RBP13.21□□□□□ -0.29
LRCH3-212ENST00000466845 CLCN6P51797 869 aa13.18□□□□□ -0.3
LRCH3-212ENST00000466845 CD44P16070 742 aaKnown RBP13.17□□□□□ -0.3
LRCH3-212ENST00000466845 PAK3O75914 559 aaPredicted RBP13.16□□□□□ -0.3
LRCH3-212ENST00000466845 EVX2Q03828 476 aa13.11□□□□□ -0.31
LRCH3-212ENST00000466845 VASPP50552 380 aaPredicted RBP13.1□□□□□ -0.31
LRCH3-212ENST00000466845 ZRANB1Q9UGI0 708 aa13.05□□□□□ -0.32
LRCH3-212ENST00000466845 ZNF579Q8NAF0 562 aaKnown RBP13.03□□□□□ -0.32
LRCH3-212ENST00000466845 KLHL34Q8N239 644 aa12.97□□□□□ -0.33
LRCH3-212ENST00000466845 GABBR2O75899 941 aa12.96□□□□□ -0.33
LRCH3-212ENST00000466845 NUBP1P53384 320 aa12.94□□□□□ -0.34
LRCH3-212ENST00000466845 TSPYL2Q9H2G4 693 aaPredicted RBP12.92□□□□□ -0.34
LRCH3-212ENST00000466845 FAM212AQ96EL1 285 aa12.91□□□□□ -0.34
LRCH3-212ENST00000466845 RASEFQ8IZ41 740 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms