RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 NISCHQ9Y2I1 1504 aa49.03■■■■■ 5.44
DDX39A-207ENST00000588542 CCDC180Q9P1Z9 1646 aa43.56■■■■■ 4.56
DDX39A-207ENST00000588542 ABCC9O60706 1549 aa42.41■■■■■ 4.38
DDX39A-207ENST00000588542 RB1CC1Q8TDY2 1594 aa40.87■■■■■ 4.13
DDX39A-207ENST00000588542 ZCCHC6Q5VYS8 1495 aaKnown RBP40.87■■■■■ 4.13
DDX39A-207ENST00000588542 NACADO15069 1562 aa40.86■■■■■ 4.13
DDX39A-207ENST00000588542 DCAF8L2P0C7V8 631 aa40.78■■■■■ 4.12
DDX39A-207ENST00000588542 MYO15BQ96JP2 1530 aa40.67■■■■■ 4.1
DDX39A-207ENST00000588542 DCAF1Q9Y4B6 1507 aa40.57■■■■■ 4.09
DDX39A-207ENST00000588542 UNC13AQ9UPW8 1703 aa40.11■■■■■ 4.01
DDX39A-207ENST00000588542 SCRIBQ14160 1630 aa39.73■■■■□ 3.95
DDX39A-207ENST00000588542 BICRAQ9NZM4 1560 aa39.71■■■■□ 3.95
DDX39A-207ENST00000588542 PABPN1Q86U42 306 aaKnown RBP eCLIP39.63■■■■□ 3.93
DDX39A-207ENST00000588542 SHROOM4Q9ULL8 1493 aa39.2■■■■□ 3.87
DDX39A-207ENST00000588542 DNAJC5BQ9UF47 199 aa38.82■■■■□ 3.8
DDX39A-207ENST00000588542 EIF4G1Q04637 1599 aaKnown RBP38.59■■■■□ 3.77
DDX39A-207ENST00000588542 CC2D2AQ9P2K1 1620 aa38.41■■■■□ 3.74
DDX39A-207ENST00000588542 CECR2Q9BXF3 1484 aa38.19■■■■□ 3.7
DDX39A-207ENST00000588542 SMARCA4P51532 1647 aa38.04■■■■□ 3.68
DDX39A-207ENST00000588542 BAZ1AQ9NRL2 1556 aaPredicted RBP37.97■■■■□ 3.67
DDX39A-207ENST00000588542 MROH2BQ7Z745 1585 aa37.8■■■■□ 3.64
DDX39A-207ENST00000588542 ATAD2BQ9ULI0 1458 aa37.75■■■■□ 3.63
DDX39A-207ENST00000588542 SMARCA2P51531 1590 aa37.7■■■■□ 3.63
DDX39A-207ENST00000588542 NCAPD3P42695 1498 aa37.7■■■■□ 3.63
DDX39A-207ENST00000588542 PEG3Q9GZU2 1588 aa37.66■■■■□ 3.62
DDX39A-207ENST00000588542 HMGXB3Q12766 1538 aa37.55■■■■□ 3.6
DDX39A-207ENST00000588542 WIZO95785 1651 aa37.44■■■■□ 3.58
DDX39A-207ENST00000588542 BAZ1BQ9UIG0 1483 aaKnown RBP37.42■■■■□ 3.58
DDX39A-207ENST00000588542 RSF1Q96T23 1441 aaPredicted RBP37.39■■■■□ 3.58
DDX39A-207ENST00000588542 TOP2AP11388 1531 aaKnown RBP37■■■■□ 3.51
DDX39A-207ENST00000588542 NESP48681 1621 aa36.78■■■■□ 3.48
DDX39A-207ENST00000588542 LAMC3Q9Y6N6 1575 aa36.7■■■■□ 3.46
DDX39A-207ENST00000588542 CADPSQ9ULU8 1353 aa36.58■■■■□ 3.45
DDX39A-207ENST00000588542 CCDC88BA6NC98 1476 aa36.56■■■■□ 3.44
DDX39A-207ENST00000588542 SUPT5HO00267 1087 aaKnown RBP36.5■■■■□ 3.43
DDX39A-207ENST00000588542 ERCC6Q03468 1493 aa36.5■■■■□ 3.43
DDX39A-207ENST00000588542 CFTRP13569 1480 aa36.43■■■■□ 3.42
DDX39A-207ENST00000588542 KIF21AQ7Z4S6 1674 aa36.42■■■■□ 3.42
DDX39A-207ENST00000588542 PDS5BQ9NTI5 1447 aa36.38■■■■□ 3.41
DDX39A-207ENST00000588542 PRDM2Q13029 1718 aa36.28■■■■□ 3.4
DDX39A-207ENST00000588542 THOC2Q8NI27 1593 aaKnown RBP36.22■■■■□ 3.39
DDX39A-207ENST00000588542 FANCD2Q9BXW9 1451 aa36.18■■■■□ 3.38
DDX39A-207ENST00000588542 CEP164Q9UPV0 1460 aa36.11■■■■□ 3.37
DDX39A-207ENST00000588542 CUX2O14529 1486 aa36.09■■■■□ 3.37
DDX39A-207ENST00000588542 MRC2Q9UBG0 1479 aa36.03■■■■□ 3.36
DDX39A-207ENST00000588542 WDR62O43379 1518 aa35.94■■■■□ 3.34
DDX39A-207ENST00000588542 URB2Q14146 1524 aaKnown RBP35.85■■■■□ 3.33
DDX39A-207ENST00000588542 TOPBP1Q92547 1522 aa35.64■■■■□ 3.3
DDX39A-207ENST00000588542 DNMBPQ6XZF7 1577 aa35.62■■■■□ 3.29
DDX39A-207ENST00000588542 ABCC8Q09428 1581 aa35.6■■■■□ 3.29
DDX39A-207ENST00000588542 CUX1P39880 1505 aa35.45■■■■□ 3.27
DDX39A-207ENST00000588542 POLA1P09884 1462 aaPredicted RBP35.35■■■■□ 3.25
DDX39A-207ENST00000588542 IFT140Q96RY7 1462 aa35.35■■■■□ 3.25
DDX39A-207ENST00000588542 TARBP1Q13395 1621 aaKnown RBP35.29■■■■□ 3.24
DDX39A-207ENST00000588542 FGD5Q6ZNL6 1462 aa35.28■■■■□ 3.24
DDX39A-207ENST00000588542 BIVM-ERCC5R4GMW8 1640 aa35.22■■■■□ 3.23
DDX39A-207ENST00000588542 WRNQ14191 1432 aaPredicted RBP eCLIP35.22■■■■□ 3.231e-9■■■■■ 51
DDX39A-207ENST00000588542 ZNF608Q9ULD9 1512 aaPredicted RBP35.22■■■■□ 3.23
DDX39A-207ENST00000588542 SYNJ1O43426 1573 aa35.21■■■■□ 3.23
DDX39A-207ENST00000588542 TOP2BQ02880 1626 aa35.2■■■■□ 3.23
DDX39A-207ENST00000588542 RAD54L2Q9Y4B4 1467 aa35.19■■■■□ 3.22
DDX39A-207ENST00000588542 SOGA1O94964 1423 aa35.17■■■■□ 3.22
DDX39A-207ENST00000588542 EIF4G3O43432 1585 aaKnown RBP35.11■■■■□ 3.21
DDX39A-207ENST00000588542 WDR97A6NE52 1622 aa35.07■■■■□ 3.21
DDX39A-207ENST00000588542 AQRO60306 1485 aaKnown RBP eCLIP35.02■■■■□ 3.21e-7■■■■■ 30.6
DDX39A-207ENST00000588542 TDRD9Q8NDG6 1382 aaKnown RBP34.95■■■■□ 3.19
DDX39A-207ENST00000588542 ABCA10Q8WWZ4 1543 aa34.95■■■■□ 3.19
DDX39A-207ENST00000588542 ABCA5Q8WWZ7 1642 aa34.84■■■■□ 3.17
DDX39A-207ENST00000588542 PBRM1Q86U86 1689 aa34.79■■■■□ 3.16
DDX39A-207ENST00000588542 DNAJC5Q9H3Z4 198 aa34.78■■■■□ 3.16
DDX39A-207ENST00000588542 GAPVD1Q14C86 1478 aa34.78■■■■□ 3.16
DDX39A-207ENST00000588542 GRIN2BQ13224 1484 aa34.75■■■■□ 3.15
DDX39A-207ENST00000588542 SNAPC4Q5SXM2 1469 aa34.7■■■■□ 3.15
DDX39A-207ENST00000588542 CHD1O14646 1710 aa34.68■■■■□ 3.14
DDX39A-207ENST00000588542 MAGI1Q96QZ7 1491 aaPredicted RBP34.65■■■■□ 3.14
DDX39A-207ENST00000588542 OSCARQ8IYS5 282 aa34.57■■■■□ 3.12
DDX39A-207ENST00000588542 ERICH3Q5RHP9 1530 aa34.53■■■■□ 3.12
DDX39A-207ENST00000588542 SYNJ2O15056 1496 aa34.51■■■■□ 3.11
DDX39A-207ENST00000588542 FBLN2P98095 1184 aa34.49■■■■□ 3.11
DDX39A-207ENST00000588542 ADAMTS12P58397 1594 aa34.48■■■■□ 3.11
DDX39A-207ENST00000588542 KIF27Q86VH2 1401 aa34.46■■■■□ 3.11
DDX39A-207ENST00000588542 TRIM41Q8WV44 630 aa34.44■■■■□ 3.1
DDX39A-207ENST00000588542 CHMP7Q8WUX9 453 aaPredicted RBP34.42■■■■□ 3.1
DDX39A-207ENST00000588542 FHAD1B1AJZ9 1412 aa34.37■■■■□ 3.09
DDX39A-207ENST00000588542 IGF1RP08069 1367 aa34.33■■■■□ 3.09
DDX39A-207ENST00000588542 GRIN2AQ12879 1464 aa34.32■■■■□ 3.08
DDX39A-207ENST00000588542 RUSC2Q8N2Y8 1516 aa34.28■■■■□ 3.08
DDX39A-207ENST00000588542 CUL7Q14999 1698 aa34.27■■■■□ 3.08
DDX39A-207ENST00000588542 CLASP1Q7Z460 1538 aa34.26■■■■□ 3.08
DDX39A-207ENST00000588542 CHIC1Q5VXU3 224 aa34.19■■■■□ 3.06
DDX39A-207ENST00000588542 CEP170Q5SW79 1584 aa34.19■■■■□ 3.06
DDX39A-207ENST00000588542 NUP160Q12769 1436 aa34.16■■■■□ 3.06
DDX39A-207ENST00000588542 RIMBP3CA6NJZ7 1639 aa34.12■■■■□ 3.05
DDX39A-207ENST00000588542 RIMBP3BA6NNM3 1639 aa34.12■■■■□ 3.05
DDX39A-207ENST00000588542 RIMBP3Q9UFD9 1639 aa34.12■■■■□ 3.05
DDX39A-207ENST00000588542 CARMIL1Q5VZK9 1371 aa34.11■■■■□ 3.05
DDX39A-207ENST00000588542 ARHGEF11O15085 1522 aa34.09■■■■□ 3.05
DDX39A-207ENST00000588542 SHROOM2Q13796 1616 aa33.95■■■■□ 3.03
DDX39A-207ENST00000588542 RAPGEF2Q9Y4G8 1499 aa33.94■■■■□ 3.02
DDX39A-207ENST00000588542 EEA1Q15075 1411 aa33.89■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms