RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 NISCHQ9Y2I1 1504 aa26.34■■□□□ 1.81
USP3-202ENST00000380324 CCDC180Q9P1Z9 1646 aa22.77■■□□□ 1.24
USP3-202ENST00000380324 ZCCHC6Q5VYS8 1495 aaKnown RBP22.21■■□□□ 1.15
USP3-202ENST00000380324 SHROOM4Q9ULL8 1493 aa21.98■■□□□ 1.11
USP3-202ENST00000380324 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
USP3-202ENST00000380324 DCAF1Q9Y4B6 1507 aa21.66■■□□□ 1.06
USP3-202ENST00000380324 ABCC9O60706 1549 aa21.4■■□□□ 1.02
USP3-202ENST00000380324 SUPT5HO00267 1087 aaKnown RBP21.27■■□□□ 1
USP3-202ENST00000380324 MYO15BQ96JP2 1530 aa21.24■□□□□ 0.99
USP3-202ENST00000380324 SCRIBQ14160 1630 aa21.17■□□□□ 0.98
USP3-202ENST00000380324 NACADO15069 1562 aa21.11■□□□□ 0.97
USP3-202ENST00000380324 RB1CC1Q8TDY2 1594 aa20.89■□□□□ 0.93
USP3-202ENST00000380324 UNC13AQ9UPW8 1703 aa20.61■□□□□ 0.89
USP3-202ENST00000380324 RSF1Q96T23 1441 aaPredicted RBP20.6■□□□□ 0.89
USP3-202ENST00000380324 CECR2Q9BXF3 1484 aa20.53■□□□□ 0.88
USP3-202ENST00000380324 MROH2BQ7Z745 1585 aa20.43■□□□□ 0.86
USP3-202ENST00000380324 CHIC1Q5VXU3 224 aa20.42■□□□□ 0.86
USP3-202ENST00000380324 WIZO95785 1651 aa20.33■□□□□ 0.85
USP3-202ENST00000380324 BAZ1AQ9NRL2 1556 aaPredicted RBP20.31■□□□□ 0.84
USP3-202ENST00000380324 BICRAQ9NZM4 1560 aa20.3■□□□□ 0.84
USP3-202ENST00000380324 PABPN1Q86U42 306 aaKnown RBP eCLIP20.27■□□□□ 0.84
USP3-202ENST00000380324 SMARCA4P51532 1647 aa20.22■□□□□ 0.83
USP3-202ENST00000380324 TOP2AP11388 1531 aaKnown RBP20.03■□□□□ 0.8
USP3-202ENST00000380324 SMARCA2P51531 1590 aa19.89■□□□□ 0.77
USP3-202ENST00000380324 TRIM41Q8WV44 630 aa19.88■□□□□ 0.77
USP3-202ENST00000380324 EIF4G1Q04637 1599 aaKnown RBP19.86■□□□□ 0.77
USP3-202ENST00000380324 PEG3Q9GZU2 1588 aa19.86■□□□□ 0.77
USP3-202ENST00000380324 CCDC88BA6NC98 1476 aa19.86■□□□□ 0.77
USP3-202ENST00000380324 ATAD2BQ9ULI0 1458 aa19.77■□□□□ 0.75
USP3-202ENST00000380324 LOC105371045A0A1W2PR82 267 aa19.75■□□□□ 0.75
USP3-202ENST00000380324 BAZ1BQ9UIG0 1483 aaKnown RBP19.72■□□□□ 0.75
USP3-202ENST00000380324 ABCC8Q09428 1581 aa19.67■□□□□ 0.74
USP3-202ENST00000380324 FAM9AQ8IZU1 332 aaPredicted RBP19.67■□□□□ 0.74
USP3-202ENST00000380324 HMGXB3Q12766 1538 aa19.5■□□□□ 0.71
USP3-202ENST00000380324 EHMT2Q96KQ7 1210 aa19.5■□□□□ 0.71
USP3-202ENST00000380324 NCAPD3P42695 1498 aa19.47■□□□□ 0.71
USP3-202ENST00000380324 WRNQ14191 1432 aaPredicted RBP eCLIP19.4■□□□□ 0.7
USP3-202ENST00000380324 SYNJ1O43426 1573 aa19.35■□□□□ 0.69
USP3-202ENST00000380324 CC2D2AQ9P2K1 1620 aa19.32■□□□□ 0.68
USP3-202ENST00000380324 SOGA1O94964 1423 aa19.32■□□□□ 0.68
USP3-202ENST00000380324 RUSC2Q8N2Y8 1516 aa19.25■□□□□ 0.67
USP3-202ENST00000380324 PCGF6Q9BYE7 350 aa19.24■□□□□ 0.67
USP3-202ENST00000380324 EEA1Q15075 1411 aa19.19■□□□□ 0.66
USP3-202ENST00000380324 CFTRP13569 1480 aa19.18■□□□□ 0.66
USP3-202ENST00000380324 TOP2BQ02880 1626 aa19.17■□□□□ 0.66
USP3-202ENST00000380324 PRDM2Q13029 1718 aa19.16■□□□□ 0.66
USP3-202ENST00000380324 BIVM-ERCC5R4GMW8 1640 aa19.14■□□□□ 0.65
USP3-202ENST00000380324 CSRNP3Q8WYN3 585 aa19.13■□□□□ 0.65
USP3-202ENST00000380324 CUX1P39880 1505 aa19.08■□□□□ 0.64
USP3-202ENST00000380324 CADPSQ9ULU8 1353 aa19.04■□□□□ 0.64
USP3-202ENST00000380324 GOLGA3Q08378 1498 aa19.04■□□□□ 0.64
USP3-202ENST00000380324 CEP162Q5TB80 1403 aa19.02■□□□□ 0.64
USP3-202ENST00000380324 UBTFP17480 764 aaKnown RBP19.01■□□□□ 0.63
USP3-202ENST00000380324 TRIM26Q12899 539 aaPredicted RBP19.01■□□□□ 0.63
USP3-202ENST00000380324 KIF21BO75037 1637 aa19■□□□□ 0.63
USP3-202ENST00000380324 TNIKQ9UKE5 1360 aa19■□□□□ 0.63
USP3-202ENST00000380324 CEP164Q9UPV0 1460 aa18.99■□□□□ 0.63
USP3-202ENST00000380324 RAPGEF2Q9Y4G8 1499 aa18.91■□□□□ 0.62
USP3-202ENST00000380324 PPARGC1BQ86YN6 1023 aaKnown RBP18.91■□□□□ 0.62
USP3-202ENST00000380324 NESP48681 1621 aa18.91■□□□□ 0.62
USP3-202ENST00000380324 FANCD2Q9BXW9 1451 aa18.89■□□□□ 0.62
USP3-202ENST00000380324 HRCP23327 699 aa18.87■□□□□ 0.61
USP3-202ENST00000380324 KIF27Q86VH2 1401 aa18.84■□□□□ 0.61
USP3-202ENST00000380324 FGD5Q6ZNL6 1462 aa18.83■□□□□ 0.6
USP3-202ENST00000380324 DNAJC5BQ9UF47 199 aa18.82■□□□□ 0.6
USP3-202ENST00000380324 LAMC3Q9Y6N6 1575 aa18.8■□□□□ 0.6
USP3-202ENST00000380324 PRXQ9BXM0 1461 aa18.79■□□□□ 0.6
USP3-202ENST00000380324 ERICH3Q5RHP9 1530 aa18.78■□□□□ 0.6
USP3-202ENST00000380324 CLIP1P30622 1438 aa18.78■□□□□ 0.6
USP3-202ENST00000380324 CUX2O14529 1486 aa18.78■□□□□ 0.6
USP3-202ENST00000380324 DNMBPQ6XZF7 1577 aa18.76■□□□□ 0.59
USP3-202ENST00000380324 RANGAP1P46060 587 aaPredicted RBP18.75■□□□□ 0.59
USP3-202ENST00000380324 TTBK1Q5TCY1 1321 aaPredicted RBP18.75■□□□□ 0.59
USP3-202ENST00000380324 TOPBP1Q92547 1522 aa18.72■□□□□ 0.59
USP3-202ENST00000380324 KIF21AQ7Z4S6 1674 aa18.68■□□□□ 0.58
USP3-202ENST00000380324 POLA1P09884 1462 aaPredicted RBP18.67■□□□□ 0.58
USP3-202ENST00000380324 RAD54L2Q9Y4B4 1467 aa18.66■□□□□ 0.58
USP3-202ENST00000380324 URB2Q14146 1524 aaKnown RBP18.65■□□□□ 0.58
USP3-202ENST00000380324 PDS5BQ9NTI5 1447 aa18.64■□□□□ 0.57
USP3-202ENST00000380324 VPS8Q8N3P4 1428 aa18.63■□□□□ 0.57
USP3-202ENST00000380324 IGF1RP08069 1367 aa18.63■□□□□ 0.57
USP3-202ENST00000380324 ABCA10Q8WWZ4 1543 aa18.6■□□□□ 0.57
USP3-202ENST00000380324 CARMIL1Q5VZK9 1371 aa18.56■□□□□ 0.56
USP3-202ENST00000380324 WDR97A6NE52 1622 aa18.55■□□□□ 0.56
USP3-202ENST00000380324 ARAP1Q96P48 1450 aa18.55■□□□□ 0.56
USP3-202ENST00000380324 APLP2Q06481 763 aa18.48■□□□□ 0.55
USP3-202ENST00000380324 ARHGAP35Q9NRY4 1499 aa18.48■□□□□ 0.55
USP3-202ENST00000380324 CUL7Q14999 1698 aa18.47■□□□□ 0.55
USP3-202ENST00000380324 ABCA5Q8WWZ7 1642 aa18.45■□□□□ 0.54
USP3-202ENST00000380324 TDRD9Q8NDG6 1382 aaKnown RBP18.44■□□□□ 0.54
USP3-202ENST00000380324 MRC2Q9UBG0 1479 aa18.41■□□□□ 0.54
USP3-202ENST00000380324 TARBP1Q13395 1621 aaKnown RBP18.41■□□□□ 0.54
USP3-202ENST00000380324 GAPVD1Q14C86 1478 aa18.4■□□□□ 0.54
USP3-202ENST00000380324 CTTNBP2Q8WZ74 1663 aa18.38■□□□□ 0.53
USP3-202ENST00000380324 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.37■□□□□ 0.53
USP3-202ENST00000380324 ZEB1P37275 1124 aaPredicted RBP18.35■□□□□ 0.53
USP3-202ENST00000380324 PBRM1Q86U86 1689 aa18.33■□□□□ 0.52
USP3-202ENST00000380324 KANK4Q5T7N3 995 aaPredicted RBP18.29■□□□□ 0.52
USP3-202ENST00000380324 CCER1Q8TC90 406 aaPredicted RBP18.29■□□□□ 0.52
USP3-202ENST00000380324 WDR62O43379 1518 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms