Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 LINC00554-201ENST00000564841 3011 ntBASIC13.69□□□□□ -0.22
VPS25Q9BRG1 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 AC020907.5-201ENST00000624372 1936 ntBASIC13.69□□□□□ -0.22
VPS25Q9BRG1 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 FLJ38576-201ENST00000623820 2459 ntBASIC13.69□□□□□ -0.22
VPS25Q9BRG1 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
VPS25Q9BRG1 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 AC067852.2-201ENST00000590513 2313 ntBASIC13.68□□□□□ -0.22
VPS25Q9BRG1 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 AC148477.6-201ENST00000623746 465 ntBASIC13.68□□□□□ -0.22
VPS25Q9BRG1 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
VPS25Q9BRG1 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 AC126177.7-201ENST00000547904 679 ntBASIC13.67□□□□□ -0.22
VPS25Q9BRG1 CHML-204ENST00000638121 920 ntTSL 2 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
VPS25Q9BRG1 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms