Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
PCDHA1Q9Y5I3 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.98■■■□□ 2.39
PCDHA1Q9Y5I3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
PCDHA1Q9Y5I3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC29.96■■■□□ 2.39
PCDHA1Q9Y5I3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC29.96■■■□□ 2.39
PCDHA1Q9Y5I3 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.95■■■□□ 2.39
PCDHA1Q9Y5I3 DUX4L11-201ENST00000611504 1267 ntBASIC29.95■■■□□ 2.39
PCDHA1Q9Y5I3 DUX4L12-201ENST00000614593 1267 ntBASIC29.95■■■□□ 2.39
PCDHA1Q9Y5I3 DUX4L14-201ENST00000621227 1267 ntBASIC29.95■■■□□ 2.39
PCDHA1Q9Y5I3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.95■■■□□ 2.38
PCDHA1Q9Y5I3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.38
PCDHA1Q9Y5I3 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
PCDHA1Q9Y5I3 LINC00273-201ENST00000539813 1452 ntBASIC29.93■■■□□ 2.38
PCDHA1Q9Y5I3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.92■■■□□ 2.38
PCDHA1Q9Y5I3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.92■■■□□ 2.38
PCDHA1Q9Y5I3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
PCDHA1Q9Y5I3 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.91■■■□□ 2.38
PCDHA1Q9Y5I3 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
PCDHA1Q9Y5I3 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC29.91■■■□□ 2.38
PCDHA1Q9Y5I3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.9■■■□□ 2.38
PCDHA1Q9Y5I3 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC29.89■■■□□ 2.38
PCDHA1Q9Y5I3 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.89■■■□□ 2.38
PCDHA1Q9Y5I3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.88■■■□□ 2.37
PCDHA1Q9Y5I3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
PCDHA1Q9Y5I3 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
PCDHA1Q9Y5I3 HLA-V-202ENST00000446817 847 ntBASIC29.87■■■□□ 2.37
PCDHA1Q9Y5I3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.87■■■□□ 2.37
PCDHA1Q9Y5I3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.87■■■□□ 2.37
PCDHA1Q9Y5I3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.87■■■□□ 2.37
PCDHA1Q9Y5I3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.86■■■□□ 2.37
PCDHA1Q9Y5I3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC29.86■■■□□ 2.37
PCDHA1Q9Y5I3 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.86■■■□□ 2.37
PCDHA1Q9Y5I3 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.86■■■□□ 2.37
PCDHA1Q9Y5I3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
PCDHA1Q9Y5I3 MIR3648-2-201ENST00000581792 180 ntBASIC29.84■■■□□ 2.37
PCDHA1Q9Y5I3 MIR3648-1-201ENST00000615959 180 ntBASIC29.84■■■□□ 2.37
PCDHA1Q9Y5I3 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.84■■■□□ 2.37
PCDHA1Q9Y5I3 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
PCDHA1Q9Y5I3 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
PCDHA1Q9Y5I3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.82■■■□□ 2.36
PCDHA1Q9Y5I3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.82■■■□□ 2.36
PCDHA1Q9Y5I3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.82■■■□□ 2.36
PCDHA1Q9Y5I3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.82■■■□□ 2.36
PCDHA1Q9Y5I3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.81■■■□□ 2.36
PCDHA1Q9Y5I3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.81■■■□□ 2.36
PCDHA1Q9Y5I3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCDHA1Q9Y5I3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L13-201ENST00000554103 1267 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L15-201ENST00000611059 1267 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L23-201ENST00000615195 1269 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L24-201ENST00000617576 1269 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L22-201ENST00000618238 1269 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L20-201ENST00000619712 1269 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L21-201ENST00000622058 1269 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L10-201ENST00000622460 1267 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 CR559946.2-201ENST00000623684 991 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 DUX4L25-201ENST00000624915 1269 ntBASIC29.8■■■□□ 2.36
PCDHA1Q9Y5I3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
PCDHA1Q9Y5I3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.79■■■□□ 2.36
PCDHA1Q9Y5I3 AC016575.1-201ENST00000607026 382 ntBASIC29.79■■■□□ 2.36
PCDHA1Q9Y5I3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PCDHA1Q9Y5I3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCDHA1Q9Y5I3 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
PCDHA1Q9Y5I3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
PCDHA1Q9Y5I3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.78■■■□□ 2.36
PCDHA1Q9Y5I3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
PCDHA1Q9Y5I3 AC135983.2-203ENST00000454486 1613 ntBASIC29.78■■■□□ 2.36
PCDHA1Q9Y5I3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCDHA1Q9Y5I3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
PCDHA1Q9Y5I3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.77■■■□□ 2.36
PCDHA1Q9Y5I3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCDHA1Q9Y5I3 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.77■■■□□ 2.36
PCDHA1Q9Y5I3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.36
PCDHA1Q9Y5I3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
PCDHA1Q9Y5I3 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.76■■■□□ 2.36
PCDHA1Q9Y5I3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PCDHA1Q9Y5I3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PCDHA1Q9Y5I3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.76■■■□□ 2.35
PCDHA1Q9Y5I3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
PCDHA1Q9Y5I3 ABCB10P1-201ENST00000614297 2181 ntBASIC29.75■■■□□ 2.35
PCDHA1Q9Y5I3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
PCDHA1Q9Y5I3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
PCDHA1Q9Y5I3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PCDHA1Q9Y5I3 WHAMMP2-203ENST00000563942 1603 ntBASIC29.74■■■□□ 2.35
PCDHA1Q9Y5I3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.74■■■□□ 2.35
PCDHA1Q9Y5I3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
PCDHA1Q9Y5I3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.74■■■□□ 2.35
PCDHA1Q9Y5I3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.74■■■□□ 2.35
PCDHA1Q9Y5I3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
PCDHA1Q9Y5I3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
PCDHA1Q9Y5I3 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.72■■■□□ 2.35
PCDHA1Q9Y5I3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
PCDHA1Q9Y5I3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.72■■■□□ 2.35
PCDHA1Q9Y5I3 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
PCDHA1Q9Y5I3 MIR639-201ENST00000384974 98 ntBASIC29.71■■■□□ 2.35
PCDHA1Q9Y5I3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.71■■■□□ 2.35
PCDHA1Q9Y5I3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.68■■■□□ 2.34
PCDHA1Q9Y5I3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.68■■■□□ 2.34
PCDHA1Q9Y5I3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms