Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.19■■■□□ 2.42
CTDP1Q9Y5B0 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.19■■■□□ 2.42
CTDP1Q9Y5B0 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CTDP1Q9Y5B0 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.18■■■□□ 2.42
CTDP1Q9Y5B0 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CTDP1Q9Y5B0 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.17■■■□□ 2.42
CTDP1Q9Y5B0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
CTDP1Q9Y5B0 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CTDP1Q9Y5B0 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CTDP1Q9Y5B0 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.15■■■□□ 2.42
CTDP1Q9Y5B0 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
CTDP1Q9Y5B0 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.14■■■□□ 2.42
CTDP1Q9Y5B0 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CTDP1Q9Y5B0 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CTDP1Q9Y5B0 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
CTDP1Q9Y5B0 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CTDP1Q9Y5B0 LINC00273-201ENST00000539813 1452 ntBASIC30.12■■■□□ 2.41
CTDP1Q9Y5B0 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CTDP1Q9Y5B0 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CTDP1Q9Y5B0 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC30.11■■■□□ 2.41
CTDP1Q9Y5B0 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.11■■■□□ 2.41
CTDP1Q9Y5B0 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.1■■■□□ 2.41
CTDP1Q9Y5B0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CTDP1Q9Y5B0 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CTDP1Q9Y5B0 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.1■■■□□ 2.41
CTDP1Q9Y5B0 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.09■■■□□ 2.41
CTDP1Q9Y5B0 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CTDP1Q9Y5B0 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CTDP1Q9Y5B0 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.08■■■□□ 2.41
CTDP1Q9Y5B0 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.08■■■□□ 2.41
CTDP1Q9Y5B0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
CTDP1Q9Y5B0 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.07■■■□□ 2.4
CTDP1Q9Y5B0 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CTDP1Q9Y5B0 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
CTDP1Q9Y5B0 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CTDP1Q9Y5B0 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.04■■■□□ 2.4
CTDP1Q9Y5B0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CTDP1Q9Y5B0 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
CTDP1Q9Y5B0 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
CTDP1Q9Y5B0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
CTDP1Q9Y5B0 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.01■■■□□ 2.39
CTDP1Q9Y5B0 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CTDP1Q9Y5B0 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30■■■□□ 2.39
CTDP1Q9Y5B0 AL135925.1-201ENST00000605920 1701 ntBASIC30■■■□□ 2.39
CTDP1Q9Y5B0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
CTDP1Q9Y5B0 AC127502.1-201ENST00000399971 1502 ntBASIC30■■■□□ 2.39
CTDP1Q9Y5B0 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.99■■■□□ 2.39
CTDP1Q9Y5B0 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC29.98■■■□□ 2.39
CTDP1Q9Y5B0 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.97■■■□□ 2.39
CTDP1Q9Y5B0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.96■■■□□ 2.39
CTDP1Q9Y5B0 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.96■■■□□ 2.39
CTDP1Q9Y5B0 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
CTDP1Q9Y5B0 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
CTDP1Q9Y5B0 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.96■■■□□ 2.39
CTDP1Q9Y5B0 HSD17B1P1-201ENST00000590052 955 ntBASIC29.95■■■□□ 2.39
CTDP1Q9Y5B0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.92■■■□□ 2.38
CTDP1Q9Y5B0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
CTDP1Q9Y5B0 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
CTDP1Q9Y5B0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
CTDP1Q9Y5B0 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
CTDP1Q9Y5B0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.91■■■□□ 2.38
CTDP1Q9Y5B0 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.91■■■□□ 2.38
CTDP1Q9Y5B0 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.91■■■□□ 2.38
CTDP1Q9Y5B0 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CTDP1Q9Y5B0 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.91■■■□□ 2.38
CTDP1Q9Y5B0 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
CTDP1Q9Y5B0 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
CTDP1Q9Y5B0 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
CTDP1Q9Y5B0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
CTDP1Q9Y5B0 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
CTDP1Q9Y5B0 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC29.89■■■□□ 2.38
CTDP1Q9Y5B0 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.89■■■□□ 2.38
CTDP1Q9Y5B0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.88■■■□□ 2.37
CTDP1Q9Y5B0 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CTDP1Q9Y5B0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC29.86■■■□□ 2.37
CTDP1Q9Y5B0 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
CTDP1Q9Y5B0 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.85■■■□□ 2.37
CTDP1Q9Y5B0 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
CTDP1Q9Y5B0 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.84■■■□□ 2.37
CTDP1Q9Y5B0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.84■■■□□ 2.37
CTDP1Q9Y5B0 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CTDP1Q9Y5B0 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.83■■■□□ 2.37
CTDP1Q9Y5B0 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
CTDP1Q9Y5B0 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CTDP1Q9Y5B0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.83■■■□□ 2.37
CTDP1Q9Y5B0 AC135983.2-203ENST00000454486 1613 ntBASIC29.82■■■□□ 2.36
CTDP1Q9Y5B0 WHAMMP2-203ENST00000563942 1603 ntBASIC29.82■■■□□ 2.36
CTDP1Q9Y5B0 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
CTDP1Q9Y5B0 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CTDP1Q9Y5B0 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.82■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms