Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
DEPDC4Q8N2C3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.86■■□□□ 1.41
DEPDC4Q8N2C3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.86■■□□□ 1.41
DEPDC4Q8N2C3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DEPDC4Q8N2C3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
DEPDC4Q8N2C3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
DEPDC4Q8N2C3 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DEPDC4Q8N2C3 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DEPDC4Q8N2C3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
DEPDC4Q8N2C3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
DEPDC4Q8N2C3 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.84■■□□□ 1.41
DEPDC4Q8N2C3 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.83■■□□□ 1.41
DEPDC4Q8N2C3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DEPDC4Q8N2C3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
DEPDC4Q8N2C3 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
DEPDC4Q8N2C3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
DEPDC4Q8N2C3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
DEPDC4Q8N2C3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
DEPDC4Q8N2C3 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
DEPDC4Q8N2C3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC23.81■■□□□ 1.4
DEPDC4Q8N2C3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
DEPDC4Q8N2C3 AL391121.1-201ENST00000607967 1349 ntBASIC23.81■■□□□ 1.4
DEPDC4Q8N2C3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DEPDC4Q8N2C3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.8■■□□□ 1.4
DEPDC4Q8N2C3 CAHM-201ENST00000604200 896 ntBASIC23.8■■□□□ 1.4
DEPDC4Q8N2C3 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DEPDC4Q8N2C3 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
DEPDC4Q8N2C3 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.79■■□□□ 1.4
DEPDC4Q8N2C3 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
DEPDC4Q8N2C3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.79■■□□□ 1.4
DEPDC4Q8N2C3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
DEPDC4Q8N2C3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
DEPDC4Q8N2C3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
DEPDC4Q8N2C3 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
DEPDC4Q8N2C3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.78■■□□□ 1.4
DEPDC4Q8N2C3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC23.78■■□□□ 1.4
DEPDC4Q8N2C3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DEPDC4Q8N2C3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
DEPDC4Q8N2C3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
DEPDC4Q8N2C3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
DEPDC4Q8N2C3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
DEPDC4Q8N2C3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DEPDC4Q8N2C3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
DEPDC4Q8N2C3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
DEPDC4Q8N2C3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC23.75■■□□□ 1.39
DEPDC4Q8N2C3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.75■■□□□ 1.39
DEPDC4Q8N2C3 AC135731.1-201ENST00000569415 2548 ntBASIC23.75■■□□□ 1.39
DEPDC4Q8N2C3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DEPDC4Q8N2C3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DEPDC4Q8N2C3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DEPDC4Q8N2C3 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
DEPDC4Q8N2C3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
DEPDC4Q8N2C3 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DEPDC4Q8N2C3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
DEPDC4Q8N2C3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DEPDC4Q8N2C3 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
DEPDC4Q8N2C3 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
DEPDC4Q8N2C3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DEPDC4Q8N2C3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DEPDC4Q8N2C3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DEPDC4Q8N2C3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
DEPDC4Q8N2C3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
DEPDC4Q8N2C3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.69■■□□□ 1.38
DEPDC4Q8N2C3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
DEPDC4Q8N2C3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.69■■□□□ 1.38
DEPDC4Q8N2C3 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
DEPDC4Q8N2C3 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.68■■□□□ 1.38
DEPDC4Q8N2C3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
DEPDC4Q8N2C3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
DEPDC4Q8N2C3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
DEPDC4Q8N2C3 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
DEPDC4Q8N2C3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
DEPDC4Q8N2C3 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DEPDC4Q8N2C3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DEPDC4Q8N2C3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
DEPDC4Q8N2C3 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.67■■□□□ 1.38
DEPDC4Q8N2C3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
DEPDC4Q8N2C3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
DEPDC4Q8N2C3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
DEPDC4Q8N2C3 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
DEPDC4Q8N2C3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
DEPDC4Q8N2C3 AP006261.1-201ENST00000584783 668 ntBASIC23.65■■□□□ 1.38
DEPDC4Q8N2C3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
DEPDC4Q8N2C3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.64■■□□□ 1.38
DEPDC4Q8N2C3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
DEPDC4Q8N2C3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
DEPDC4Q8N2C3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
DEPDC4Q8N2C3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.63■■□□□ 1.37
DEPDC4Q8N2C3 BX255925.1-201ENST00000566954 1854 ntBASIC23.62■■□□□ 1.37
DEPDC4Q8N2C3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.62■■□□□ 1.37
DEPDC4Q8N2C3 WASH5P-204ENST00000632292 975 ntBASIC23.62■■□□□ 1.37
DEPDC4Q8N2C3 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
DEPDC4Q8N2C3 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
DEPDC4Q8N2C3 HNRNPLP2-201ENST00000568980 1570 ntBASIC23.61■■□□□ 1.37
DEPDC4Q8N2C3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
DEPDC4Q8N2C3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
DEPDC4Q8N2C3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
DEPDC4Q8N2C3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
DEPDC4Q8N2C3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
DEPDC4Q8N2C3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms