Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PDLIM4P50479 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PDLIM4P50479 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PDLIM4P50479 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
PDLIM4P50479 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
PDLIM4P50479 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.02■■□□□ 1.12
PDLIM4P50479 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.02■■□□□ 1.12
PDLIM4P50479 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.01■■□□□ 1.11
PDLIM4P50479 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
PDLIM4P50479 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22■■□□□ 1.11
PDLIM4P50479 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22■■□□□ 1.11
PDLIM4P50479 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC22■■□□□ 1.11
PDLIM4P50479 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
PDLIM4P50479 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC21.99■■□□□ 1.11
PDLIM4P50479 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
PDLIM4P50479 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.98■■□□□ 1.11
PDLIM4P50479 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.98■■□□□ 1.11
PDLIM4P50479 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.98■■□□□ 1.11
PDLIM4P50479 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PDLIM4P50479 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.97■■□□□ 1.11
PDLIM4P50479 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.97■■□□□ 1.11
PDLIM4P50479 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
PDLIM4P50479 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
PDLIM4P50479 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
PDLIM4P50479 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC21.96■■□□□ 1.11
PDLIM4P50479 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.96■■□□□ 1.11
PDLIM4P50479 AC010864.1-201ENST00000609407 1511 ntBASIC21.96■■□□□ 1.11
PDLIM4P50479 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.95■■□□□ 1.1
PDLIM4P50479 HSD17B1P1-201ENST00000590052 955 ntBASIC21.94■■□□□ 1.1
PDLIM4P50479 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM4P50479 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM4P50479 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
PDLIM4P50479 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM4P50479 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PDLIM4P50479 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM4P50479 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PDLIM4P50479 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.93■■□□□ 1.1
PDLIM4P50479 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM4P50479 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PDLIM4P50479 LINC00273-201ENST00000539813 1452 ntBASIC21.92■■□□□ 1.1
PDLIM4P50479 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM4P50479 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PDLIM4P50479 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM4P50479 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM4P50479 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
PDLIM4P50479 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
PDLIM4P50479 AC139426.1-201ENST00000568218 2529 ntBASIC21.9■■□□□ 1.1
PDLIM4P50479 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.9■■□□□ 1.1
PDLIM4P50479 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.9■■□□□ 1.1
PDLIM4P50479 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM4P50479 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM4P50479 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PDLIM4P50479 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.89■■□□□ 1.09
PDLIM4P50479 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PDLIM4P50479 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.88■■□□□ 1.09
PDLIM4P50479 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PDLIM4P50479 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
PDLIM4P50479 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.86■■□□□ 1.09
PDLIM4P50479 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PDLIM4P50479 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PDLIM4P50479 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.85■■□□□ 1.09
PDLIM4P50479 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.84■■□□□ 1.09
PDLIM4P50479 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PDLIM4P50479 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.84■■□□□ 1.09
PDLIM4P50479 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.84■■□□□ 1.09
PDLIM4P50479 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.84■■□□□ 1.09
PDLIM4P50479 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PDLIM4P50479 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PDLIM4P50479 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PDLIM4P50479 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PDLIM4P50479 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PDLIM4P50479 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.81■■□□□ 1.08
PDLIM4P50479 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PDLIM4P50479 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDLIM4P50479 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PDLIM4P50479 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDLIM4P50479 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PDLIM4P50479 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
PDLIM4P50479 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDLIM4P50479 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PDLIM4P50479 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM4P50479 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms