Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 GPX1-201ENST00000419349 1106 ntBASIC29.46■■■□□ 2.31
PGK1P00558 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
PGK1P00558 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
PGK1P00558 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PGK1P00558 AL161658.1-201ENST00000623641 1967 ntBASIC29.45■■■□□ 2.31
PGK1P00558 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.45■■■□□ 2.31
PGK1P00558 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.45■■■□□ 2.31
PGK1P00558 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
PGK1P00558 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PGK1P00558 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PGK1P00558 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PGK1P00558 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PGK1P00558 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.42■■■□□ 2.3
PGK1P00558 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
PGK1P00558 ABHD17AP5-201ENST00000580133 923 ntBASIC29.42■■■□□ 2.3
PGK1P00558 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
PGK1P00558 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.41■■■□□ 2.3
PGK1P00558 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.41■■■□□ 2.3
PGK1P00558 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC29.4■■■□□ 2.3
PGK1P00558 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
PGK1P00558 LINC00273-201ENST00000539813 1452 ntBASIC29.4■■■□□ 2.3
PGK1P00558 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
PGK1P00558 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
PGK1P00558 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.38■■■□□ 2.29
PGK1P00558 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PGK1P00558 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
PGK1P00558 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.37■■■□□ 2.29
PGK1P00558 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC29.36■■■□□ 2.29
PGK1P00558 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
PGK1P00558 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
PGK1P00558 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.35■■■□□ 2.29
PGK1P00558 CEP120-209ENST00000515110 606 ntTSL 3 BASIC29.35■■■□□ 2.29
PGK1P00558 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.35■■■□□ 2.29
PGK1P00558 RNF126P1-201ENST00000567452 1320 ntBASIC29.35■■■□□ 2.29
PGK1P00558 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.34■■■□□ 2.29
PGK1P00558 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
PGK1P00558 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
PGK1P00558 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
PGK1P00558 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
PGK1P00558 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
PGK1P00558 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
PGK1P00558 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
PGK1P00558 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
PGK1P00558 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.29■■■□□ 2.28
PGK1P00558 AC010864.1-201ENST00000609407 1511 ntBASIC29.29■■■□□ 2.28
PGK1P00558 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
PGK1P00558 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
PGK1P00558 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.28■■■□□ 2.28
PGK1P00558 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
PGK1P00558 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PGK1P00558 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.28■■■□□ 2.28
PGK1P00558 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
PGK1P00558 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC29.27■■■□□ 2.28
PGK1P00558 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
PGK1P00558 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
PGK1P00558 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PGK1P00558 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
PGK1P00558 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC29.23■■■□□ 2.27
PGK1P00558 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
PGK1P00558 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
PGK1P00558 AC022413.1-201ENST00000624602 984 ntBASIC29.22■■■□□ 2.27
PGK1P00558 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
PGK1P00558 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.2■■■□□ 2.27
PGK1P00558 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
PGK1P00558 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
PGK1P00558 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.26
PGK1P00558 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
PGK1P00558 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29.19■■■□□ 2.26
PGK1P00558 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
PGK1P00558 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
PGK1P00558 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.18■■■□□ 2.26
PGK1P00558 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC29.18■■■□□ 2.26
PGK1P00558 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
PGK1P00558 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.18■■■□□ 2.26
PGK1P00558 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.17■■■□□ 2.26
PGK1P00558 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
PGK1P00558 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
PGK1P00558 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC29.15■■■□□ 2.26
PGK1P00558 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
PGK1P00558 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
PGK1P00558 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.26
PGK1P00558 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
PGK1P00558 NTF6A-201ENST00000591175 560 ntBASIC29.13■■■□□ 2.25
PGK1P00558 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC29.13■■■□□ 2.25
PGK1P00558 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
PGK1P00558 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
PGK1P00558 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
PGK1P00558 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC29.12■■■□□ 2.25
PGK1P00558 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC29.12■■■□□ 2.25
PGK1P00558 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
PGK1P00558 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
PGK1P00558 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
PGK1P00558 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
PGK1P00558 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PGK1P00558 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
PGK1P00558 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PGK1P00558 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PGK1P00558 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
PGK1P00558 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
PGK1P00558 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms