Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
PTCD1O75127 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC33.86■■■■□ 3.01
PTCD1O75127 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC33.86■■■■□ 3.01
PTCD1O75127 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC33.86■■■■□ 3.01
PTCD1O75127 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
PTCD1O75127 AC010864.1-201ENST00000609407 1511 ntBASIC33.85■■■■□ 3.01
PTCD1O75127 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC33.85■■■■□ 3.01
PTCD1O75127 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC33.85■■■■□ 3.01
PTCD1O75127 LINC00273-201ENST00000539813 1452 ntBASIC33.84■■■■□ 3.01
PTCD1O75127 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
PTCD1O75127 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC33.84■■■■□ 3.01
PTCD1O75127 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC33.82■■■■□ 3
PTCD1O75127 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC33.82■■■■□ 3
PTCD1O75127 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC33.82■■■■□ 3
PTCD1O75127 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC33.82■■■■□ 3
PTCD1O75127 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
PTCD1O75127 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC33.81■■■■□ 3
PTCD1O75127 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC33.81■■■■□ 3
PTCD1O75127 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
PTCD1O75127 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC33.79■■■■□ 3
PTCD1O75127 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC33.79■■■■□ 3
PTCD1O75127 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC33.78■■■■□ 3
PTCD1O75127 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.78■■■■□ 3
PTCD1O75127 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
PTCD1O75127 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
PTCD1O75127 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC33.77■■■■□ 3
PTCD1O75127 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC33.77■■■■□ 3
PTCD1O75127 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
PTCD1O75127 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
PTCD1O75127 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC33.76■■■□□ 2.99
PTCD1O75127 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC33.76■■■□□ 2.99
PTCD1O75127 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC33.74■■■□□ 2.99
PTCD1O75127 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC33.74■■■□□ 2.99
PTCD1O75127 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
PTCD1O75127 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC33.73■■■□□ 2.99
PTCD1O75127 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
PTCD1O75127 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
PTCD1O75127 RARRES2P2-201ENST00000394842 485 ntBASIC33.71■■■□□ 2.99
PTCD1O75127 GPX1-201ENST00000419349 1106 ntBASIC33.7■■■□□ 2.99
PTCD1O75127 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC33.7■■■□□ 2.99
PTCD1O75127 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC33.69■■■□□ 2.98
PTCD1O75127 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC33.69■■■□□ 2.98
PTCD1O75127 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
PTCD1O75127 TPT1-202ENST00000379055 948 ntTSL 2 BASIC33.68■■■□□ 2.98
PTCD1O75127 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC33.67■■■□□ 2.98
PTCD1O75127 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC33.67■■■□□ 2.98
PTCD1O75127 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC33.66■■■□□ 2.98
PTCD1O75127 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC33.65■■■□□ 2.98
PTCD1O75127 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC33.65■■■□□ 2.98
PTCD1O75127 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC33.65■■■□□ 2.98
PTCD1O75127 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
PTCD1O75127 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
PTCD1O75127 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC33.61■■■□□ 2.97
PTCD1O75127 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
PTCD1O75127 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC33.61■■■□□ 2.97
PTCD1O75127 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC33.61■■■□□ 2.97
PTCD1O75127 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC33.61■■■□□ 2.97
PTCD1O75127 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
PTCD1O75127 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC33.6■■■□□ 2.97
PTCD1O75127 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC33.6■■■□□ 2.97
PTCD1O75127 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC33.59■■■□□ 2.97
PTCD1O75127 CEP120-209ENST00000515110 606 ntTSL 3 BASIC33.59■■■□□ 2.97
PTCD1O75127 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC33.58■■■□□ 2.97
PTCD1O75127 AC127502.1-201ENST00000399971 1502 ntBASIC33.58■■■□□ 2.97
PTCD1O75127 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC33.57■■■□□ 2.96
PTCD1O75127 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.96
PTCD1O75127 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC33.56■■■□□ 2.96
PTCD1O75127 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC33.56■■■□□ 2.96
PTCD1O75127 ABHD17AP5-201ENST00000580133 923 ntBASIC33.56■■■□□ 2.96
PTCD1O75127 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC33.56■■■□□ 2.96
PTCD1O75127 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
PTCD1O75127 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
PTCD1O75127 RNF126P1-201ENST00000567452 1320 ntBASIC33.55■■■□□ 2.96
PTCD1O75127 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC33.55■■■□□ 2.96
PTCD1O75127 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
PTCD1O75127 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC33.54■■■□□ 2.96
PTCD1O75127 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
PTCD1O75127 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC33.53■■■□□ 2.96
PTCD1O75127 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
PTCD1O75127 WHAMMP2-203ENST00000563942 1603 ntBASIC33.51■■■□□ 2.96
PTCD1O75127 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
PTCD1O75127 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC33.51■■■□□ 2.95
PTCD1O75127 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
PTCD1O75127 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC33.51■■■□□ 2.95
PTCD1O75127 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC33.51■■■□□ 2.95
PTCD1O75127 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
PTCD1O75127 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC33.49■■■□□ 2.95
PTCD1O75127 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
PTCD1O75127 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC33.48■■■□□ 2.95
PTCD1O75127 AC135983.2-203ENST00000454486 1613 ntBASIC33.48■■■□□ 2.95
PTCD1O75127 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
PTCD1O75127 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC33.47■■■□□ 2.95
PTCD1O75127 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC33.47■■■□□ 2.95
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms