Protein–RNA interactions for Protein: A0A0C4DH34

IGHV4-28, Immunoglobulin heavy variable 4-28, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV4-28A0A0C4DH34 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
IGHV4-28A0A0C4DH34 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
IGHV4-28A0A0C4DH34 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
IGHV4-28A0A0C4DH34 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
IGHV4-28A0A0C4DH34 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
IGHV4-28A0A0C4DH34 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.73■□□□□ 0.59
IGHV4-28A0A0C4DH34 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
IGHV4-28A0A0C4DH34 AC127502.1-201ENST00000399971 1502 ntBASIC18.73■□□□□ 0.59
IGHV4-28A0A0C4DH34 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC18.72■□□□□ 0.59
IGHV4-28A0A0C4DH34 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
IGHV4-28A0A0C4DH34 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.71■□□□□ 0.59
IGHV4-28A0A0C4DH34 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.71■□□□□ 0.59
IGHV4-28A0A0C4DH34 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
IGHV4-28A0A0C4DH34 HLA-V-202ENST00000446817 847 ntBASIC18.7■□□□□ 0.58
IGHV4-28A0A0C4DH34 DUX4L11-201ENST00000611504 1267 ntBASIC18.7■□□□□ 0.58
IGHV4-28A0A0C4DH34 DUX4L12-201ENST00000614593 1267 ntBASIC18.7■□□□□ 0.58
IGHV4-28A0A0C4DH34 DUX4L14-201ENST00000621227 1267 ntBASIC18.7■□□□□ 0.58
IGHV4-28A0A0C4DH34 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
IGHV4-28A0A0C4DH34 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
IGHV4-28A0A0C4DH34 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
IGHV4-28A0A0C4DH34 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
IGHV4-28A0A0C4DH34 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC18.69■□□□□ 0.58
IGHV4-28A0A0C4DH34 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.69■□□□□ 0.58
IGHV4-28A0A0C4DH34 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
IGHV4-28A0A0C4DH34 ST7-AS1-201ENST00000456775 1889 ntBASIC18.69■□□□□ 0.58
IGHV4-28A0A0C4DH34 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
IGHV4-28A0A0C4DH34 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
IGHV4-28A0A0C4DH34 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC18.68■□□□□ 0.58
IGHV4-28A0A0C4DH34 LINC00273-201ENST00000539813 1452 ntBASIC18.68■□□□□ 0.58
IGHV4-28A0A0C4DH34 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
IGHV4-28A0A0C4DH34 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.68■□□□□ 0.58
IGHV4-28A0A0C4DH34 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
IGHV4-28A0A0C4DH34 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
IGHV4-28A0A0C4DH34 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.67■□□□□ 0.58
IGHV4-28A0A0C4DH34 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.67■□□□□ 0.58
IGHV4-28A0A0C4DH34 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
IGHV4-28A0A0C4DH34 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
IGHV4-28A0A0C4DH34 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.67■□□□□ 0.58
IGHV4-28A0A0C4DH34 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
IGHV4-28A0A0C4DH34 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
IGHV4-28A0A0C4DH34 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC18.66■□□□□ 0.58
IGHV4-28A0A0C4DH34 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.66■□□□□ 0.58
IGHV4-28A0A0C4DH34 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
IGHV4-28A0A0C4DH34 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC18.65■□□□□ 0.58
IGHV4-28A0A0C4DH34 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC18.65■□□□□ 0.58
IGHV4-28A0A0C4DH34 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC18.65■□□□□ 0.58
IGHV4-28A0A0C4DH34 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC18.64■□□□□ 0.58
IGHV4-28A0A0C4DH34 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.64■□□□□ 0.57
IGHV4-28A0A0C4DH34 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
IGHV4-28A0A0C4DH34 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
IGHV4-28A0A0C4DH34 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
IGHV4-28A0A0C4DH34 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
IGHV4-28A0A0C4DH34 AGPS-202ENST00000409888 815 ntTSL 4 BASIC18.63■□□□□ 0.57
IGHV4-28A0A0C4DH34 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.63■□□□□ 0.57
IGHV4-28A0A0C4DH34 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
IGHV4-28A0A0C4DH34 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 MIR3648-2-201ENST00000581792 180 ntBASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 MIR3648-1-201ENST00000615959 180 ntBASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 GDI1-215ENST00000630693 786 ntTSL 4 BASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC18.62■□□□□ 0.57
IGHV4-28A0A0C4DH34 AC016575.1-201ENST00000607026 382 ntBASIC18.61■□□□□ 0.57
IGHV4-28A0A0C4DH34 CR559946.2-201ENST00000623684 991 ntBASIC18.61■□□□□ 0.57
IGHV4-28A0A0C4DH34 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
IGHV4-28A0A0C4DH34 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L13-201ENST00000554103 1267 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L15-201ENST00000611059 1267 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L23-201ENST00000615195 1269 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L24-201ENST00000617576 1269 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L22-201ENST00000618238 1269 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L20-201ENST00000619712 1269 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L21-201ENST00000622058 1269 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L10-201ENST00000622460 1267 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 DUX4L25-201ENST00000624915 1269 ntBASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 CHML-204ENST00000638121 920 ntTSL 2 BASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
IGHV4-28A0A0C4DH34 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
IGHV4-28A0A0C4DH34 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
IGHV4-28A0A0C4DH34 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
IGHV4-28A0A0C4DH34 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
IGHV4-28A0A0C4DH34 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
IGHV4-28A0A0C4DH34 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
IGHV4-28A0A0C4DH34 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
IGHV4-28A0A0C4DH34 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
IGHV4-28A0A0C4DH34 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
IGHV4-28A0A0C4DH34 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC18.57■□□□□ 0.56
IGHV4-28A0A0C4DH34 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
IGHV4-28A0A0C4DH34 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms