Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DUX4L13-201ENST00000554103 1267 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L15-201ENST00000611059 1267 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L23-201ENST00000615195 1269 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L24-201ENST00000617576 1269 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L22-201ENST00000618238 1269 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L20-201ENST00000619712 1269 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L21-201ENST00000622058 1269 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L10-201ENST00000622460 1267 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 DUX4L25-201ENST00000624915 1269 ntBASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV40A0A0B4J280 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV40A0A0B4J280 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV40A0A0B4J280 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAV40A0A0B4J280 LINC00273-201ENST00000539813 1452 ntBASIC21.2■□□□□ 0.98
TRAV40A0A0B4J280 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.2■□□□□ 0.98
TRAV40A0A0B4J280 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.2■□□□□ 0.98
TRAV40A0A0B4J280 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV40A0A0B4J280 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV40A0A0B4J280 AL135925.1-201ENST00000605920 1701 ntBASIC21.18■□□□□ 0.98
TRAV40A0A0B4J280 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TRAV40A0A0B4J280 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TRAV40A0A0B4J280 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TRAV40A0A0B4J280 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV40A0A0B4J280 AC127502.1-201ENST00000399971 1502 ntBASIC21.16■□□□□ 0.98
TRAV40A0A0B4J280 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV40A0A0B4J280 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAV40A0A0B4J280 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAV40A0A0B4J280 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.16■□□□□ 0.98
TRAV40A0A0B4J280 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
TRAV40A0A0B4J280 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV40A0A0B4J280 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.14■□□□□ 0.97
TRAV40A0A0B4J280 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV40A0A0B4J280 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV40A0A0B4J280 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.13■□□□□ 0.97
TRAV40A0A0B4J280 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV40A0A0B4J280 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV40A0A0B4J280 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV40A0A0B4J280 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV40A0A0B4J280 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.12■□□□□ 0.97
TRAV40A0A0B4J280 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.12■□□□□ 0.97
TRAV40A0A0B4J280 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAV40A0A0B4J280 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV40A0A0B4J280 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV40A0A0B4J280 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV40A0A0B4J280 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV40A0A0B4J280 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.1■□□□□ 0.97
TRAV40A0A0B4J280 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV40A0A0B4J280 ST7-205ENST00000393446 2114 ntTSL 5 BASIC21.09■□□□□ 0.97
TRAV40A0A0B4J280 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.07■□□□□ 0.96
TRAV40A0A0B4J280 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.07■□□□□ 0.96
TRAV40A0A0B4J280 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC21.07■□□□□ 0.96
TRAV40A0A0B4J280 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
TRAV40A0A0B4J280 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV40A0A0B4J280 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.06■□□□□ 0.96
TRAV40A0A0B4J280 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV40A0A0B4J280 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV40A0A0B4J280 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV40A0A0B4J280 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV40A0A0B4J280 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TRAV40A0A0B4J280 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV40A0A0B4J280 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRAV40A0A0B4J280 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRAV40A0A0B4J280 ST7-202ENST00000323984 2142 ntTSL 5 BASIC21.04■□□□□ 0.96
TRAV40A0A0B4J280 ST7-207ENST00000393449 2127 ntTSL 5 BASIC21.04■□□□□ 0.96
TRAV40A0A0B4J280 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV40A0A0B4J280 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV40A0A0B4J280 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.03■□□□□ 0.96
TRAV40A0A0B4J280 WHAMMP2-203ENST00000563942 1603 ntBASIC21.03■□□□□ 0.96
TRAV40A0A0B4J280 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV40A0A0B4J280 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.02■□□□□ 0.96
TRAV40A0A0B4J280 AC135983.2-203ENST00000454486 1613 ntBASIC21.02■□□□□ 0.96
TRAV40A0A0B4J280 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV40A0A0B4J280 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21■□□□□ 0.95
TRAV40A0A0B4J280 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV40A0A0B4J280 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRAV40A0A0B4J280 HSD17B1P1-201ENST00000590052 955 ntBASIC20.99■□□□□ 0.95
TRAV40A0A0B4J280 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.98■□□□□ 0.95
TRAV40A0A0B4J280 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.98■□□□□ 0.95
TRAV40A0A0B4J280 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV40A0A0B4J280 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.98■□□□□ 0.95
TRAV40A0A0B4J280 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV40A0A0B4J280 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms