Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
LSM1O15116 BX119927.1-201ENST00000636596 1552 ntBASIC19.4■□□□□ 0.7
LSM1O15116 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LSM1O15116 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LSM1O15116 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LSM1O15116 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
LSM1O15116 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
LSM1O15116 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.39■□□□□ 0.69
LSM1O15116 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
LSM1O15116 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LSM1O15116 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
LSM1O15116 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.39■□□□□ 0.69
LSM1O15116 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.39■□□□□ 0.69
LSM1O15116 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
LSM1O15116 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.39■□□□□ 0.69
LSM1O15116 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.69
LSM1O15116 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.39■□□□□ 0.69
LSM1O15116 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.39■□□□□ 0.69
LSM1O15116 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LSM1O15116 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.38■□□□□ 0.69
LSM1O15116 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.38■□□□□ 0.69
LSM1O15116 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.38■□□□□ 0.69
LSM1O15116 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LSM1O15116 AC087633.2-202ENST00000565166 1439 ntBASIC19.38■□□□□ 0.69
LSM1O15116 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.38■□□□□ 0.69
LSM1O15116 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.38■□□□□ 0.69
LSM1O15116 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
LSM1O15116 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.38■□□□□ 0.69
LSM1O15116 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LSM1O15116 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.37■□□□□ 0.69
LSM1O15116 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.37■□□□□ 0.69
LSM1O15116 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.37■□□□□ 0.69
LSM1O15116 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.37■□□□□ 0.69
LSM1O15116 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.37■□□□□ 0.69
LSM1O15116 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.37■□□□□ 0.69
LSM1O15116 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.37■□□□□ 0.69
LSM1O15116 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.37■□□□□ 0.69
LSM1O15116 AC010536.3-201ENST00000620306 533 ntBASIC19.37■□□□□ 0.69
LSM1O15116 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.37■□□□□ 0.69
LSM1O15116 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LSM1O15116 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.37■□□□□ 0.69
LSM1O15116 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.37■□□□□ 0.69
LSM1O15116 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
LSM1O15116 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.36■□□□□ 0.69
LSM1O15116 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.36■□□□□ 0.69
LSM1O15116 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.36■□□□□ 0.69
LSM1O15116 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LSM1O15116 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LSM1O15116 PGM5P4-201ENST00000421970 445 ntBASIC19.36■□□□□ 0.69
LSM1O15116 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 TERF1P5-201ENST00000477545 1207 ntBASIC19.36■□□□□ 0.69
LSM1O15116 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.36■□□□□ 0.69
LSM1O15116 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LSM1O15116 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LSM1O15116 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms