RNA–Protein interactions for RNA: ENST00000380180.7

PDLIM5-205, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 2,020 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-205ENST00000380180 NISCHQ9Y2I1 1504 aa44.2■■■■■ 4.67
PDLIM5-205ENST00000380180 CCDC180Q9P1Z9 1646 aa38.35■■■■□ 3.73
PDLIM5-205ENST00000380180 ZCCHC6Q5VYS8 1495 aaKnown RBP37.17■■■■□ 3.54
PDLIM5-205ENST00000380180 DCAF8L2P0C7V8 631 aa36.56■■■■□ 3.44
PDLIM5-205ENST00000380180 DCAF1Q9Y4B6 1507 aa36.46■■■■□ 3.43
PDLIM5-205ENST00000380180 SHROOM4Q9ULL8 1493 aa36.43■■■■□ 3.42
PDLIM5-205ENST00000380180 ABCC9O60706 1549 aa36.08■■■■□ 3.37
PDLIM5-205ENST00000380180 MYO15BQ96JP2 1530 aa35.89■■■■□ 3.34
PDLIM5-205ENST00000380180 NACADO15069 1562 aa35.63■■■■□ 3.29
PDLIM5-205ENST00000380180 SCRIBQ14160 1630 aa35.41■■■■□ 3.26
PDLIM5-205ENST00000380180 RB1CC1Q8TDY2 1594 aa35.27■■■■□ 3.24
PDLIM5-205ENST00000380180 SUPT5HO00267 1087 aaKnown RBP35.22■■■■□ 3.23
PDLIM5-205ENST00000380180 UNC13AQ9UPW8 1703 aa34.73■■■■□ 3.15
PDLIM5-205ENST00000380180 RSF1Q96T23 1441 aaPredicted RBP34.44■■■■□ 3.1
PDLIM5-205ENST00000380180 CECR2Q9BXF3 1484 aa34.38■■■■□ 3.09
PDLIM5-205ENST00000380180 BICRAQ9NZM4 1560 aa34.26■■■■□ 3.08
PDLIM5-205ENST00000380180 MROH2BQ7Z745 1585 aa34.21■■■■□ 3.07
PDLIM5-205ENST00000380180 PABPN1Q86U42 306 aaKnown RBP eCLIP34.13■■■■□ 3.05
PDLIM5-205ENST00000380180 BAZ1AQ9NRL2 1556 aaPredicted RBP34.08■■■■□ 3.05
PDLIM5-205ENST00000380180 WIZO95785 1651 aa33.99■■■■□ 3.03
PDLIM5-205ENST00000380180 SMARCA4P51532 1647 aa33.92■■■■□ 3.02
PDLIM5-205ENST00000380180 CHIC1Q5VXU3 224 aa33.84■■■■□ 3.01
PDLIM5-205ENST00000380180 TOP2AP11388 1531 aaKnown RBP33.53■■■□□ 2.96
PDLIM5-205ENST00000380180 PEG3Q9GZU2 1588 aa33.44■■■□□ 2.94
PDLIM5-205ENST00000380180 SMARCA2P51531 1590 aa33.28■■■□□ 2.92
PDLIM5-205ENST00000380180 ATAD2BQ9ULI0 1458 aa33.26■■■□□ 2.92
PDLIM5-205ENST00000380180 CCDC88BA6NC98 1476 aa33.25■■■□□ 2.91
PDLIM5-205ENST00000380180 EIF4G1Q04637 1599 aaKnown RBP33.18■■■□□ 2.9
PDLIM5-205ENST00000380180 BAZ1BQ9UIG0 1483 aaKnown RBP33.1■■■□□ 2.89
PDLIM5-205ENST00000380180 TRIM41Q8WV44 630 aa33.03■■■□□ 2.88
PDLIM5-205ENST00000380180 NCAPD3P42695 1498 aa32.89■■■□□ 2.86
PDLIM5-205ENST00000380180 HMGXB3Q12766 1538 aa32.86■■■□□ 2.85
PDLIM5-205ENST00000380180 ABCC8Q09428 1581 aa32.72■■■□□ 2.83
PDLIM5-205ENST00000380180 LOC105371045A0A1W2PR82 267 aa32.64■■■□□ 2.82
PDLIM5-205ENST00000380180 CC2D2AQ9P2K1 1620 aa32.64■■■□□ 2.82
PDLIM5-205ENST00000380180 FAM9AQ8IZU1 332 aaPredicted RBP32.51■■■□□ 2.8
PDLIM5-205ENST00000380180 WRNQ14191 1432 aaPredicted RBP eCLIP32.39■■■□□ 2.78
PDLIM5-205ENST00000380180 SYNJ1O43426 1573 aa32.28■■■□□ 2.76
PDLIM5-205ENST00000380180 CFTRP13569 1480 aa32.27■■■□□ 2.76
PDLIM5-205ENST00000380180 PRDM2Q13029 1718 aa32.19■■■□□ 2.74
PDLIM5-205ENST00000380180 SOGA1O94964 1423 aa32.16■■■□□ 2.74
PDLIM5-205ENST00000380180 EHMT2Q96KQ7 1210 aa32.11■■■□□ 2.73
PDLIM5-205ENST00000380180 CADPSQ9ULU8 1353 aa32.11■■■□□ 2.73
PDLIM5-205ENST00000380180 TOP2BQ02880 1626 aa32.1■■■□□ 2.73
PDLIM5-205ENST00000380180 BIVM-ERCC5R4GMW8 1640 aa32.06■■■□□ 2.72
PDLIM5-205ENST00000380180 RUSC2Q8N2Y8 1516 aa32.05■■■□□ 2.72
PDLIM5-205ENST00000380180 EEA1Q15075 1411 aa32.03■■■□□ 2.72
PDLIM5-205ENST00000380180 CUX1P39880 1505 aa31.95■■■□□ 2.7
PDLIM5-205ENST00000380180 CSRNP3Q8WYN3 585 aa31.93■■■□□ 2.7
PDLIM5-205ENST00000380180 DNAJC5BQ9UF47 199 aa31.82■■■□□ 2.68
PDLIM5-205ENST00000380180 NESP48681 1621 aa31.8■■■□□ 2.68
PDLIM5-205ENST00000380180 FANCD2Q9BXW9 1451 aa31.76■■■□□ 2.68
PDLIM5-205ENST00000380180 LAMC3Q9Y6N6 1575 aa31.73■■■□□ 2.67
PDLIM5-205ENST00000380180 GOLGA3Q08378 1498 aa31.66■■■□□ 2.66
PDLIM5-205ENST00000380180 KIF21BO75037 1637 aa31.65■■■□□ 2.66
PDLIM5-205ENST00000380180 TNIKQ9UKE5 1360 aa31.63■■■□□ 2.65
PDLIM5-205ENST00000380180 CEP164Q9UPV0 1460 aa31.62■■■□□ 2.65
PDLIM5-205ENST00000380180 UBTFP17480 764 aaKnown RBP31.59■■■□□ 2.65
PDLIM5-205ENST00000380180 FGD5Q6ZNL6 1462 aa31.54■■■□□ 2.64
PDLIM5-205ENST00000380180 KIF27Q86VH2 1401 aa31.53■■■□□ 2.64
PDLIM5-205ENST00000380180 DNMBPQ6XZF7 1577 aa31.52■■■□□ 2.64
PDLIM5-205ENST00000380180 CEP162Q5TB80 1403 aa31.51■■■□□ 2.63
PDLIM5-205ENST00000380180 PCGF6Q9BYE7 350 aa31.47■■■□□ 2.63
PDLIM5-205ENST00000380180 PDS5BQ9NTI5 1447 aa31.47■■■□□ 2.63
PDLIM5-205ENST00000380180 RAPGEF2Q9Y4G8 1499 aa31.47■■■□□ 2.63
PDLIM5-205ENST00000380180 TOPBP1Q92547 1522 aa31.46■■■□□ 2.63
PDLIM5-205ENST00000380180 KIF21AQ7Z4S6 1674 aa31.43■■■□□ 2.62
PDLIM5-205ENST00000380180 CUX2O14529 1486 aa31.4■■■□□ 2.62
PDLIM5-205ENST00000380180 PRXQ9BXM0 1461 aa31.4■■■□□ 2.62
PDLIM5-205ENST00000380180 URB2Q14146 1524 aaKnown RBP31.36■■■□□ 2.61
PDLIM5-205ENST00000380180 ERICH3Q5RHP9 1530 aa31.36■■■□□ 2.61
PDLIM5-205ENST00000380180 POLA1P09884 1462 aaPredicted RBP31.34■■■□□ 2.61
PDLIM5-205ENST00000380180 TRIM26Q12899 539 aaPredicted RBP31.32■■■□□ 2.6
PDLIM5-205ENST00000380180 RAD54L2Q9Y4B4 1467 aa31.28■■■□□ 2.6
PDLIM5-205ENST00000380180 IGF1RP08069 1367 aa31.25■■■□□ 2.59
PDLIM5-205ENST00000380180 ABCA10Q8WWZ4 1543 aa31.23■■■□□ 2.59
PDLIM5-205ENST00000380180 CLIP1P30622 1438 aa31.19■■■□□ 2.58
PDLIM5-205ENST00000380180 WDR97A6NE52 1622 aa31.14■■■□□ 2.58
PDLIM5-205ENST00000380180 PPARGC1BQ86YN6 1023 aaKnown RBP31.12■■■□□ 2.57
PDLIM5-205ENST00000380180 CARMIL1Q5VZK9 1371 aa31.1■■■□□ 2.57
PDLIM5-205ENST00000380180 RANGAP1P46060 587 aaPredicted RBP31.07■■■□□ 2.56
PDLIM5-205ENST00000380180 MRC2Q9UBG0 1479 aa31.05■■■□□ 2.56
PDLIM5-205ENST00000380180 TARBP1Q13395 1621 aaKnown RBP30.98■■■□□ 2.55
PDLIM5-205ENST00000380180 ABCA5Q8WWZ7 1642 aa30.97■■■□□ 2.55
PDLIM5-205ENST00000380180 TDRD9Q8NDG6 1382 aaKnown RBP30.96■■■□□ 2.55
PDLIM5-205ENST00000380180 VPS8Q8N3P4 1428 aa30.95■■■□□ 2.54
PDLIM5-205ENST00000380180 CUL7Q14999 1698 aa30.94■■■□□ 2.54
PDLIM5-205ENST00000380180 GAPVD1Q14C86 1478 aa30.9■■■□□ 2.54
PDLIM5-205ENST00000380180 WDR62O43379 1518 aa30.87■■■□□ 2.53
PDLIM5-205ENST00000380180 ERCC6Q03468 1493 aa30.86■■■□□ 2.53
PDLIM5-205ENST00000380180 ARAP1Q96P48 1450 aa30.84■■■□□ 2.53
PDLIM5-205ENST00000380180 TTBK1Q5TCY1 1321 aaPredicted RBP30.79■■■□□ 2.52
PDLIM5-205ENST00000380180 ARHGAP35Q9NRY4 1499 aa30.79■■■□□ 2.52
PDLIM5-205ENST00000380180 HRCP23327 699 aa30.77■■■□□ 2.52
PDLIM5-205ENST00000380180 PBRM1Q86U86 1689 aa30.75■■■□□ 2.51
PDLIM5-205ENST00000380180 THOC2Q8NI27 1593 aaKnown RBP30.73■■■□□ 2.51
PDLIM5-205ENST00000380180 CTTNBP2Q8WZ74 1663 aa30.72■■■□□ 2.51
PDLIM5-205ENST00000380180 IFT140Q96RY7 1462 aa30.71■■■□□ 2.51
PDLIM5-205ENST00000380180 AQRO60306 1485 aaKnown RBP eCLIP30.7■■■□□ 2.51
PDLIM5-205ENST00000380180 APLP2Q06481 763 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms