Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.4■□□□□ 0.38
ABCA4P78363 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.4■□□□□ 0.38
ABCA4P78363 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
ABCA4P78363 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.4■□□□□ 0.38
ABCA4P78363 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA4P78363 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ABCA4P78363 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.39■□□□□ 0.38
ABCA4P78363 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.39■□□□□ 0.38
ABCA4P78363 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.39■□□□□ 0.38
ABCA4P78363 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
ABCA4P78363 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA4P78363 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA4P78363 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
ABCA4P78363 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.39■□□□□ 0.37
ABCA4P78363 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.39■□□□□ 0.37
ABCA4P78363 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA4P78363 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.39■□□□□ 0.37
ABCA4P78363 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA4P78363 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.39■□□□□ 0.37
ABCA4P78363 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
ABCA4P78363 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.39■□□□□ 0.37
ABCA4P78363 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA4P78363 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ABCA4P78363 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
ABCA4P78363 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.38■□□□□ 0.37
ABCA4P78363 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
ABCA4P78363 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.38■□□□□ 0.37
ABCA4P78363 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.38■□□□□ 0.37
ABCA4P78363 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.38■□□□□ 0.37
ABCA4P78363 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.38■□□□□ 0.37
ABCA4P78363 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.38■□□□□ 0.37
ABCA4P78363 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
ABCA4P78363 PTBP1P-201ENST00000554374 1601 ntBASIC17.38■□□□□ 0.37
ABCA4P78363 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
ABCA4P78363 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.38■□□□□ 0.37
ABCA4P78363 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ABCA4P78363 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
ABCA4P78363 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.37■□□□□ 0.37
ABCA4P78363 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ABCA4P78363 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
ABCA4P78363 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.37■□□□□ 0.37
ABCA4P78363 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ABCA4P78363 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.37■□□□□ 0.37
ABCA4P78363 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
ABCA4P78363 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
ABCA4P78363 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ABCA4P78363 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ABCA4P78363 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.37■□□□□ 0.37
ABCA4P78363 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.37■□□□□ 0.37
ABCA4P78363 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
ABCA4P78363 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.37■□□□□ 0.37
ABCA4P78363 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.37■□□□□ 0.37
ABCA4P78363 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.37■□□□□ 0.37
ABCA4P78363 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.37■□□□□ 0.37
ABCA4P78363 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ABCA4P78363 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ABCA4P78363 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.37■□□□□ 0.37
ABCA4P78363 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.37■□□□□ 0.37
ABCA4P78363 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ABCA4P78363 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
ABCA4P78363 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.36■□□□□ 0.37
ABCA4P78363 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
ABCA4P78363 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.36■□□□□ 0.37
ABCA4P78363 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
ABCA4P78363 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.36■□□□□ 0.37
ABCA4P78363 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.36■□□□□ 0.37
ABCA4P78363 AC073195.1-201ENST00000607241 877 ntBASIC17.36■□□□□ 0.37
ABCA4P78363 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.36■□□□□ 0.37
ABCA4P78363 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ABCA4P78363 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
ABCA4P78363 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ABCA4P78363 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms