RNA–Protein interactions for RNA: ENST00000394986.5

SNCA-203, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCA, Length 1,420 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-203ENST00000394986 NISCHQ9Y2I1 1504 aa48.07■■■■■ 5.29
SNCA-203ENST00000394986 CCDC180Q9P1Z9 1646 aa42.57■■■■■ 4.41
SNCA-203ENST00000394986 ABCC9O60706 1549 aa41.62■■■■■ 4.25
SNCA-203ENST00000394986 DCAF8L2P0C7V8 631 aa40.16■■■■■ 4.02
SNCA-203ENST00000394986 ZCCHC6Q5VYS8 1495 aaKnown RBP40.1■■■■■ 4.01
SNCA-203ENST00000394986 RB1CC1Q8TDY2 1594 aa40.01■■■■■ 4
SNCA-203ENST00000394986 NACADO15069 1562 aa40■■■■□ 3.99
SNCA-203ENST00000394986 MYO15BQ96JP2 1530 aa39.78■■■■□ 3.96
SNCA-203ENST00000394986 DCAF1Q9Y4B6 1507 aa39.71■■■■□ 3.95
SNCA-203ENST00000394986 UNC13AQ9UPW8 1703 aa39.1■■■■□ 3.85
SNCA-203ENST00000394986 SCRIBQ14160 1630 aa39■■■■□ 3.83
SNCA-203ENST00000394986 PABPN1Q86U42 306 aaKnown RBP eCLIP38.96■■■■□ 3.83
SNCA-203ENST00000394986 BICRAQ9NZM4 1560 aa38.86■■■■□ 3.81
SNCA-203ENST00000394986 SHROOM4Q9ULL8 1493 aa38.35■■■■□ 3.73
SNCA-203ENST00000394986 DNAJC5BQ9UF47 199 aa38.04■■■■□ 3.68
SNCA-203ENST00000394986 EIF4G1Q04637 1599 aaKnown RBP37.8■■■■□ 3.64
SNCA-203ENST00000394986 CC2D2AQ9P2K1 1620 aa37.6■■■■□ 3.61
SNCA-203ENST00000394986 CECR2Q9BXF3 1484 aa37.5■■■■□ 3.59
SNCA-203ENST00000394986 SMARCA4P51532 1647 aa37.26■■■■□ 3.56
SNCA-203ENST00000394986 BAZ1AQ9NRL2 1556 aaPredicted RBP37.22■■■■□ 3.55
SNCA-203ENST00000394986 MROH2BQ7Z745 1585 aa37.1■■■■□ 3.53
SNCA-203ENST00000394986 ATAD2BQ9ULI0 1458 aa37.02■■■■□ 3.52
SNCA-203ENST00000394986 NCAPD3P42695 1498 aa36.94■■■■□ 3.5
SNCA-203ENST00000394986 SMARCA2P51531 1590 aa36.93■■■■□ 3.5
SNCA-203ENST00000394986 PEG3Q9GZU2 1588 aa36.85■■■■□ 3.49
SNCA-203ENST00000394986 HMGXB3Q12766 1538 aa36.77■■■■□ 3.48
SNCA-203ENST00000394986 RSF1Q96T23 1441 aaPredicted RBP36.74■■■■□ 3.47
SNCA-203ENST00000394986 BAZ1BQ9UIG0 1483 aaKnown RBP36.73■■■■□ 3.47
SNCA-203ENST00000394986 WIZO95785 1651 aa36.7■■■■□ 3.46
SNCA-203ENST00000394986 TOP2AP11388 1531 aaKnown RBP36.29■■■■□ 3.4
SNCA-203ENST00000394986 NESP48681 1621 aa36.09■■■■□ 3.37
SNCA-203ENST00000394986 SUPT5HO00267 1087 aaKnown RBP36.01■■■■□ 3.36
SNCA-203ENST00000394986 LAMC3Q9Y6N6 1575 aa35.9■■■■□ 3.34
SNCA-203ENST00000394986 CADPSQ9ULU8 1353 aa35.89■■■■□ 3.34
SNCA-203ENST00000394986 CCDC88BA6NC98 1476 aa35.89■■■■□ 3.34
SNCA-203ENST00000394986 ERCC6Q03468 1493 aa35.82■■■■□ 3.32
SNCA-203ENST00000394986 CFTRP13569 1480 aa35.72■■■■□ 3.31
SNCA-203ENST00000394986 PDS5BQ9NTI5 1447 aa35.68■■■■□ 3.3
SNCA-203ENST00000394986 KIF21AQ7Z4S6 1674 aa35.6■■■■□ 3.29
SNCA-203ENST00000394986 FANCD2Q9BXW9 1451 aa35.51■■■■□ 3.27
SNCA-203ENST00000394986 THOC2Q8NI27 1593 aaKnown RBP35.44■■■■□ 3.26
SNCA-203ENST00000394986 CEP164Q9UPV0 1460 aa35.43■■■■□ 3.26
SNCA-203ENST00000394986 PRDM2Q13029 1718 aa35.37■■■■□ 3.25
SNCA-203ENST00000394986 MRC2Q9UBG0 1479 aa35.34■■■■□ 3.25
SNCA-203ENST00000394986 CUX2O14529 1486 aa35.31■■■■□ 3.24
SNCA-203ENST00000394986 WDR62O43379 1518 aa35.2■■■■□ 3.23
SNCA-203ENST00000394986 URB2Q14146 1524 aaKnown RBP35.16■■■■□ 3.22
SNCA-203ENST00000394986 TOPBP1Q92547 1522 aa34.95■■■■□ 3.19
SNCA-203ENST00000394986 DNMBPQ6XZF7 1577 aa34.9■■■■□ 3.18
SNCA-203ENST00000394986 ABCC8Q09428 1581 aa34.86■■■■□ 3.17
SNCA-203ENST00000394986 CUX1P39880 1505 aa34.79■■■■□ 3.16
SNCA-203ENST00000394986 POLA1P09884 1462 aaPredicted RBP34.69■■■■□ 3.14
SNCA-203ENST00000394986 IFT140Q96RY7 1462 aa34.66■■■■□ 3.14
SNCA-203ENST00000394986 FGD5Q6ZNL6 1462 aa34.63■■■■□ 3.13
SNCA-203ENST00000394986 WRNQ14191 1432 aaPredicted RBP eCLIP34.62■■■■□ 3.13
SNCA-203ENST00000394986 RAD54L2Q9Y4B4 1467 aa34.57■■■■□ 3.12
SNCA-203ENST00000394986 ZNF608Q9ULD9 1512 aaPredicted RBP34.56■■■■□ 3.12
SNCA-203ENST00000394986 SYNJ1O43426 1573 aa34.55■■■■□ 3.12
SNCA-203ENST00000394986 TARBP1Q13395 1621 aaKnown RBP34.54■■■■□ 3.12
SNCA-203ENST00000394986 SOGA1O94964 1423 aa34.53■■■■□ 3.12
SNCA-203ENST00000394986 TOP2BQ02880 1626 aa34.49■■■■□ 3.11
SNCA-203ENST00000394986 BIVM-ERCC5R4GMW8 1640 aa34.47■■■■□ 3.11
SNCA-203ENST00000394986 EIF4G3O43432 1585 aaKnown RBP34.39■■■■□ 3.1
SNCA-203ENST00000394986 AQRO60306 1485 aaKnown RBP eCLIP34.39■■■■□ 3.1
SNCA-203ENST00000394986 TDRD9Q8NDG6 1382 aaKnown RBP34.36■■■■□ 3.09
SNCA-203ENST00000394986 WDR97A6NE52 1622 aa34.29■■■■□ 3.08
SNCA-203ENST00000394986 ABCA10Q8WWZ4 1543 aa34.27■■■■□ 3.08
SNCA-203ENST00000394986 GAPVD1Q14C86 1478 aa34.13■■■■□ 3.05
SNCA-203ENST00000394986 ABCA5Q8WWZ7 1642 aa34.12■■■■□ 3.05
SNCA-203ENST00000394986 GRIN2BQ13224 1484 aa34.08■■■■□ 3.05
SNCA-203ENST00000394986 SNAPC4Q5SXM2 1469 aa34.06■■■■□ 3.04
SNCA-203ENST00000394986 DNAJC5Q9H3Z4 198 aa34.03■■■■□ 3.04
SNCA-203ENST00000394986 PBRM1Q86U86 1689 aa34.02■■■■□ 3.04
SNCA-203ENST00000394986 MAGI1Q96QZ7 1491 aaPredicted RBP33.95■■■■□ 3.03
SNCA-203ENST00000394986 FBLN2P98095 1184 aa33.94■■■■□ 3.02
SNCA-203ENST00000394986 TRIM41Q8WV44 630 aa33.94■■■■□ 3.02
SNCA-203ENST00000394986 OSCARQ8IYS5 282 aa33.9■■■■□ 3.02
SNCA-203ENST00000394986 CHD1O14646 1710 aa33.89■■■■□ 3.02
SNCA-203ENST00000394986 KIF27Q86VH2 1401 aa33.86■■■■□ 3.01
SNCA-203ENST00000394986 SYNJ2O15056 1496 aa33.84■■■■□ 3.01
SNCA-203ENST00000394986 ERICH3Q5RHP9 1530 aa33.84■■■■□ 3.01
SNCA-203ENST00000394986 CHMP7Q8WUX9 453 aaPredicted RBP33.82■■■■□ 3
SNCA-203ENST00000394986 ADAMTS12P58397 1594 aa33.8■■■■□ 3
SNCA-203ENST00000394986 FHAD1B1AJZ9 1412 aa33.73■■■□□ 2.99
SNCA-203ENST00000394986 IGF1RP08069 1367 aa33.72■■■□□ 2.99
SNCA-203ENST00000394986 RUSC2Q8N2Y8 1516 aa33.71■■■□□ 2.99
SNCA-203ENST00000394986 CHIC1Q5VXU3 224 aa33.69■■■□□ 2.98
SNCA-203ENST00000394986 GRIN2AQ12879 1464 aa33.67■■■□□ 2.98
SNCA-203ENST00000394986 CUL7Q14999 1698 aa33.56■■■□□ 2.96
SNCA-203ENST00000394986 CLASP1Q7Z460 1538 aa33.54■■■□□ 2.96
SNCA-203ENST00000394986 CARMIL1Q5VZK9 1371 aa33.52■■■□□ 2.96
SNCA-203ENST00000394986 CEP170Q5SW79 1584 aa33.51■■■□□ 2.96
SNCA-203ENST00000394986 NUP160Q12769 1436 aa33.5■■■□□ 2.95
SNCA-203ENST00000394986 ARHGEF11O15085 1522 aa33.4■■■□□ 2.94
SNCA-203ENST00000394986 RIMBP3CA6NJZ7 1639 aa33.37■■■□□ 2.93
SNCA-203ENST00000394986 RIMBP3BA6NNM3 1639 aa33.37■■■□□ 2.93
SNCA-203ENST00000394986 RIMBP3Q9UFD9 1639 aa33.37■■■□□ 2.93
SNCA-203ENST00000394986 RAPGEF2Q9Y4G8 1499 aa33.33■■■□□ 2.93
SNCA-203ENST00000394986 FAM9AQ8IZU1 332 aaPredicted RBP33.33■■■□□ 2.93
SNCA-203ENST00000394986 EEA1Q15075 1411 aa33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms