Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.2■□□□□ 0.82
LDB2O43679 ID1-201ENST00000376105 1233 ntBASIC20.2■□□□□ 0.82
LDB2O43679 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.2■□□□□ 0.82
LDB2O43679 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.2■□□□□ 0.82
LDB2O43679 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LDB2O43679 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.2■□□□□ 0.82
LDB2O43679 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.19■□□□□ 0.82
LDB2O43679 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.19■□□□□ 0.82
LDB2O43679 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
LDB2O43679 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 GUSBP6-202ENST00000438529 1198 ntBASIC20.19■□□□□ 0.82
LDB2O43679 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.19■□□□□ 0.82
LDB2O43679 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LDB2O43679 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.19■□□□□ 0.82
LDB2O43679 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.19■□□□□ 0.82
LDB2O43679 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB2O43679 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
LDB2O43679 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LDB2O43679 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 BX276092.2-201ENST00000417668 665 ntBASIC20.18■□□□□ 0.82
LDB2O43679 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LDB2O43679 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.18■□□□□ 0.82
LDB2O43679 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.18■□□□□ 0.82
LDB2O43679 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
LDB2O43679 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
LDB2O43679 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.18■□□□□ 0.82
LDB2O43679 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB2O43679 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.17■□□□□ 0.82
LDB2O43679 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.17■□□□□ 0.82
LDB2O43679 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
LDB2O43679 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 LSM12P1-201ENST00000411836 588 ntBASIC20.17■□□□□ 0.82
LDB2O43679 MIPEPP3-201ENST00000412105 444 ntBASIC20.17■□□□□ 0.82
LDB2O43679 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
LDB2O43679 C2orf69P4-201ENST00000565394 541 ntBASIC20.17■□□□□ 0.82
LDB2O43679 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.17■□□□□ 0.82
LDB2O43679 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.17■□□□□ 0.82
LDB2O43679 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.17■□□□□ 0.82
LDB2O43679 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.17■□□□□ 0.82
LDB2O43679 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.17■□□□□ 0.82
LDB2O43679 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB2O43679 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LDB2O43679 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 TSPY6P-201ENST00000448518 926 ntBASIC20.16■□□□□ 0.82
LDB2O43679 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB2O43679 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LDB2O43679 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 SLC25A24-204ENST00000569674 2357 ntBASIC20.16■□□□□ 0.82
LDB2O43679 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LDB2O43679 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LDB2O43679 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LDB2O43679 TCF3P1-201ENST00000423021 1937 ntBASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms