RNA–Protein interactions for RNA: ENST00000243563.7

SNRPA-201, Transcript of small nuclear ribonucleoprotein polypeptide A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRPA, Length 1,621 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA-201ENST00000243563 NISCHQ9Y2I1 1504 aa47.8■■■■■ 5.24
SNRPA-201ENST00000243563 CCDC180Q9P1Z9 1646 aa42.16■■■■■ 4.34
SNRPA-201ENST00000243563 ABCC9O60706 1549 aa40.58■■■■■ 4.09
SNRPA-201ENST00000243563 ZCCHC6Q5VYS8 1495 aaKnown RBP40■■■■□ 3.99
SNRPA-201ENST00000243563 DCAF8L2P0C7V8 631 aa39.58■■■■□ 3.93
SNRPA-201ENST00000243563 DCAF1Q9Y4B6 1507 aa39.5■■■■□ 3.91
SNRPA-201ENST00000243563 NACADO15069 1562 aa39.38■■■■□ 3.89
SNRPA-201ENST00000243563 MYO15BQ96JP2 1530 aa39.34■■■■□ 3.89
SNRPA-201ENST00000243563 RB1CC1Q8TDY2 1594 aa39.26■■■■□ 3.88
SNRPA-201ENST00000243563 UNC13AQ9UPW8 1703 aa38.64■■■■□ 3.78
SNRPA-201ENST00000243563 SCRIBQ14160 1630 aa38.64■■■■□ 3.78
SNRPA-201ENST00000243563 SHROOM4Q9ULL8 1493 aa38.34■■■■□ 3.73
SNRPA-201ENST00000243563 BICRAQ9NZM4 1560 aa38.21■■■■□ 3.71
SNRPA-201ENST00000243563 PABPN1Q86U42 306 aaKnown RBP eCLIP38.03■■■■□ 3.683e-10■■■□□ 15.3
SNRPA-201ENST00000243563 CECR2Q9BXF3 1484 aa37.25■■■■□ 3.55
SNRPA-201ENST00000243563 EIF4G1Q04637 1599 aaKnown RBP37.06■■■■□ 3.52
SNRPA-201ENST00000243563 SMARCA4P51532 1647 aa36.98■■■■□ 3.51
SNRPA-201ENST00000243563 BAZ1AQ9NRL2 1556 aaPredicted RBP36.95■■■■□ 3.51
SNRPA-201ENST00000243563 MROH2BQ7Z745 1585 aa36.93■■■■□ 3.5
SNRPA-201ENST00000243563 CC2D2AQ9P2K1 1620 aa36.75■■■■□ 3.47
SNRPA-201ENST00000243563 RSF1Q96T23 1441 aaPredicted RBP36.72■■■■□ 3.47
SNRPA-201ENST00000243563 WIZO95785 1651 aa36.63■■■■□ 3.45
SNRPA-201ENST00000243563 DNAJC5BQ9UF47 199 aa36.6■■■■□ 3.45
SNRPA-201ENST00000243563 PEG3Q9GZU2 1588 aa36.55■■■■□ 3.44
SNRPA-201ENST00000243563 ATAD2BQ9ULI0 1458 aa36.53■■■■□ 3.44
SNRPA-201ENST00000243563 SMARCA2P51531 1590 aa36.46■■■■□ 3.43
SNRPA-201ENST00000243563 SUPT5HO00267 1087 aaKnown RBP36.36■■■■□ 3.41
SNRPA-201ENST00000243563 NCAPD3P42695 1498 aa36.33■■■■□ 3.41
SNRPA-201ENST00000243563 HMGXB3Q12766 1538 aa36.26■■■■□ 3.39
SNRPA-201ENST00000243563 BAZ1BQ9UIG0 1483 aaKnown RBP36.24■■■■□ 3.39
SNRPA-201ENST00000243563 TOP2AP11388 1531 aaKnown RBP36.16■■■■□ 3.38
SNRPA-201ENST00000243563 CCDC88BA6NC98 1476 aa35.76■■■■□ 3.31
SNRPA-201ENST00000243563 NESP48681 1621 aa35.4■■■■□ 3.26
SNRPA-201ENST00000243563 CADPSQ9ULU8 1353 aa35.3■■■■□ 3.24
SNRPA-201ENST00000243563 CFTRP13569 1480 aa35.29■■■■□ 3.24
SNRPA-201ENST00000243563 LAMC3Q9Y6N6 1575 aa35.27■■■■□ 3.24
SNRPA-201ENST00000243563 PRDM2Q13029 1718 aa35.23■■■■□ 3.23
SNRPA-201ENST00000243563 KIF21AQ7Z4S6 1674 aa35.04■■■■□ 3.2
SNRPA-201ENST00000243563 FANCD2Q9BXW9 1451 aa34.96■■■■□ 3.19
SNRPA-201ENST00000243563 PDS5BQ9NTI5 1447 aa34.93■■■■□ 3.18
SNRPA-201ENST00000243563 CEP164Q9UPV0 1460 aa34.82■■■■□ 3.16
SNRPA-201ENST00000243563 ERCC6Q03468 1493 aa34.8■■■■□ 3.16
SNRPA-201ENST00000243563 ABCC8Q09428 1581 aa34.79■■■■□ 3.16
SNRPA-201ENST00000243563 THOC2Q8NI27 1593 aaKnown RBP34.68■■■■□ 3.14
SNRPA-201ENST00000243563 URB2Q14146 1524 aaKnown RBP34.64■■■■□ 3.14
SNRPA-201ENST00000243563 MRC2Q9UBG0 1479 aa34.62■■■■□ 3.13
SNRPA-201ENST00000243563 CUX1P39880 1505 aa34.6■■■■□ 3.13
SNRPA-201ENST00000243563 SYNJ1O43426 1573 aa34.58■■■■□ 3.13
SNRPA-201ENST00000243563 WRNQ14191 1432 aaPredicted RBP eCLIP34.55■■■■□ 3.12
SNRPA-201ENST00000243563 DNMBPQ6XZF7 1577 aa34.53■■■■□ 3.12
SNRPA-201ENST00000243563 TOPBP1Q92547 1522 aa34.52■■■■□ 3.12
SNRPA-201ENST00000243563 WDR62O43379 1518 aa34.51■■■■□ 3.12
SNRPA-201ENST00000243563 BIVM-ERCC5R4GMW8 1640 aa34.48■■■■□ 3.11
SNRPA-201ENST00000243563 TOP2BQ02880 1626 aa34.46■■■■□ 3.11
SNRPA-201ENST00000243563 CHIC1Q5VXU3 224 aa34.39■■■■□ 3.1
SNRPA-201ENST00000243563 FGD5Q6ZNL6 1462 aa34.32■■■■□ 3.08
SNRPA-201ENST00000243563 POLA1P09884 1462 aaPredicted RBP34.28■■■■□ 3.08
SNRPA-201ENST00000243563 CUX2O14529 1486 aa34.22■■■■□ 3.07
SNRPA-201ENST00000243563 TRIM41Q8WV44 630 aa34.21■■■■□ 3.07
SNRPA-201ENST00000243563 RAD54L2Q9Y4B4 1467 aa34.17■■■■□ 3.06
SNRPA-201ENST00000243563 TARBP1Q13395 1621 aaKnown RBP34.14■■■■□ 3.06
SNRPA-201ENST00000243563 WDR97A6NE52 1622 aa34.09■■■■□ 3.05
SNRPA-201ENST00000243563 SOGA1O94964 1423 aa34.08■■■■□ 3.05
SNRPA-201ENST00000243563 IFT140Q96RY7 1462 aa34.02■■■■□ 3.04
SNRPA-201ENST00000243563 ABCA10Q8WWZ4 1543 aa33.97■■■■□ 3.03
SNRPA-201ENST00000243563 ZNF608Q9ULD9 1512 aaPredicted RBP33.95■■■■□ 3.03
SNRPA-201ENST00000243563 RUSC2Q8N2Y8 1516 aa33.88■■■■□ 3.01
SNRPA-201ENST00000243563 ABCA5Q8WWZ7 1642 aa33.86■■■■□ 3.01
SNRPA-201ENST00000243563 EIF4G3O43432 1585 aaKnown RBP33.85■■■■□ 3.01
SNRPA-201ENST00000243563 TDRD9Q8NDG6 1382 aaKnown RBP33.85■■■■□ 3.01
SNRPA-201ENST00000243563 AQRO60306 1485 aaKnown RBP eCLIP33.82■■■■□ 38e-7■■■■■ 31
SNRPA-201ENST00000243563 PBRM1Q86U86 1689 aa33.74■■■□□ 2.99
SNRPA-201ENST00000243563 GAPVD1Q14C86 1478 aa33.71■■■□□ 2.99
SNRPA-201ENST00000243563 KIF27Q86VH2 1401 aa33.71■■■□□ 2.99
SNRPA-201ENST00000243563 FAM9AQ8IZU1 332 aaPredicted RBP33.62■■■□□ 2.97
SNRPA-201ENST00000243563 GRIN2BQ13224 1484 aa33.58■■■□□ 2.97
SNRPA-201ENST00000243563 ERICH3Q5RHP9 1530 aa33.55■■■□□ 2.96
SNRPA-201ENST00000243563 IGF1RP08069 1367 aa33.55■■■□□ 2.96
SNRPA-201ENST00000243563 EEA1Q15075 1411 aa33.52■■■□□ 2.96
SNRPA-201ENST00000243563 SNAPC4Q5SXM2 1469 aa33.51■■■□□ 2.96
SNRPA-201ENST00000243563 ADAMTS12P58397 1594 aa33.46■■■□□ 2.95
SNRPA-201ENST00000243563 CUL7Q14999 1698 aa33.43■■■□□ 2.94
SNRPA-201ENST00000243563 CSRNP3Q8WYN3 585 aa33.42■■■□□ 2.94
SNRPA-201ENST00000243563 MAGI1Q96QZ7 1491 aaPredicted RBP33.4■■■□□ 2.94
SNRPA-201ENST00000243563 PRXQ9BXM0 1461 aa33.34■■■□□ 2.93
SNRPA-201ENST00000243563 CHD1O14646 1710 aa33.33■■■□□ 2.93
SNRPA-201ENST00000243563 CARMIL1Q5VZK9 1371 aa33.33■■■□□ 2.93
SNRPA-201ENST00000243563 FHAD1B1AJZ9 1412 aa33.32■■■□□ 2.92
SNRPA-201ENST00000243563 SYNJ2O15056 1496 aa33.29■■■□□ 2.92
SNRPA-201ENST00000243563 KIF21BO75037 1637 aa33.28■■■□□ 2.92
SNRPA-201ENST00000243563 RAPGEF2Q9Y4G8 1499 aa33.24■■■□□ 2.91
SNRPA-201ENST00000243563 GRIN2AQ12879 1464 aa33.2■■■□□ 2.91
SNRPA-201ENST00000243563 EHMT2Q96KQ7 1210 aa33.2■■■□□ 2.9
SNRPA-201ENST00000243563 FBLN2P98095 1184 aa33.17■■■□□ 2.9
SNRPA-201ENST00000243563 CHMP7Q8WUX9 453 aaPredicted RBP33.14■■■□□ 2.9
SNRPA-201ENST00000243563 CEP170Q5SW79 1584 aa33.1■■■□□ 2.89
SNRPA-201ENST00000243563 GOLGA3Q08378 1498 aa33.08■■■□□ 2.89
SNRPA-201ENST00000243563 LOC105371045A0A1W2PR82 267 aa33.05■■■□□ 2.88
SNRPA-201ENST00000243563 CTTNBP2Q8WZ74 1663 aa33.02■■■□□ 2.88
SNRPA-201ENST00000243563 NUP160Q12769 1436 aa33.01■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms