RNA–Protein interactions for RNA: ENST00000600573.5

PNKP-214, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5 BASIC

Gene PNKP, Length 1,602 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-214ENST00000600573 NISCHQ9Y2I1 1504 aa45.26■■■■■ 4.84
PNKP-214ENST00000600573 CCDC180Q9P1Z9 1646 aa39.49■■■■□ 3.91
PNKP-214ENST00000600573 ZCCHC6Q5VYS8 1495 aaKnown RBP38.01■■■■□ 3.67
PNKP-214ENST00000600573 DCAF1Q9Y4B6 1507 aa37.56■■■■□ 3.6
PNKP-214ENST00000600573 DCAF8L2P0C7V8 631 aa37.31■■■■□ 3.56
PNKP-214ENST00000600573 ABCC9O60706 1549 aa37.31■■■■□ 3.56
PNKP-214ENST00000600573 MYO15BQ96JP2 1530 aa37.17■■■■□ 3.54
PNKP-214ENST00000600573 NACADO15069 1562 aa36.85■■■■□ 3.49
PNKP-214ENST00000600573 SHROOM4Q9ULL8 1493 aa36.69■■■■□ 3.46
PNKP-214ENST00000600573 RB1CC1Q8TDY2 1594 aa36.49■■■■□ 3.43
PNKP-214ENST00000600573 SCRIBQ14160 1630 aa36.14■■■■□ 3.38
PNKP-214ENST00000600573 UNC13AQ9UPW8 1703 aa35.51■■■■□ 3.27
PNKP-214ENST00000600573 SUPT5HO00267 1087 aaKnown RBP35.41■■■■□ 3.26
PNKP-214ENST00000600573 BICRAQ9NZM4 1560 aa35.26■■■■□ 3.23
PNKP-214ENST00000600573 PABPN1Q86U42 306 aaKnown RBP eCLIP35.1■■■■□ 3.215e-6■■■■□ 22.2
PNKP-214ENST00000600573 RSF1Q96T23 1441 aaPredicted RBP35.09■■■■□ 3.21
PNKP-214ENST00000600573 CECR2Q9BXF3 1484 aa35.06■■■■□ 3.2
PNKP-214ENST00000600573 BAZ1AQ9NRL2 1556 aaPredicted RBP34.99■■■■□ 3.19
PNKP-214ENST00000600573 MROH2BQ7Z745 1585 aa34.87■■■■□ 3.17
PNKP-214ENST00000600573 SMARCA4P51532 1647 aa34.74■■■■□ 3.15
PNKP-214ENST00000600573 WIZO95785 1651 aa34.53■■■■□ 3.12
PNKP-214ENST00000600573 PEG3Q9GZU2 1588 aa34.42■■■■□ 3.1
PNKP-214ENST00000600573 TOP2AP11388 1531 aaKnown RBP34.31■■■■□ 3.08
PNKP-214ENST00000600573 SMARCA2P51531 1590 aa34.27■■■■□ 3.08
PNKP-214ENST00000600573 EIF4G1Q04637 1599 aaKnown RBP34.25■■■■□ 3.07
PNKP-214ENST00000600573 ATAD2BQ9ULI0 1458 aa34.24■■■■□ 3.07
PNKP-214ENST00000600573 BAZ1BQ9UIG0 1483 aaKnown RBP34.03■■■■□ 3.04
PNKP-214ENST00000600573 NCAPD3P42695 1498 aa34.02■■■■□ 3.04
PNKP-214ENST00000600573 CHIC1Q5VXU3 224 aa33.97■■■■□ 3.03
PNKP-214ENST00000600573 CCDC88BA6NC98 1476 aa33.94■■■■□ 3.02
PNKP-214ENST00000600573 HMGXB3Q12766 1538 aa33.93■■■■□ 3.02
PNKP-214ENST00000600573 CC2D2AQ9P2K1 1620 aa33.79■■■■□ 3
PNKP-214ENST00000600573 TRIM41Q8WV44 630 aa33.43■■■□□ 2.94
PNKP-214ENST00000600573 DNAJC5BQ9UF47 199 aa33.43■■■□□ 2.94
PNKP-214ENST00000600573 CFTRP13569 1480 aa33.22■■■□□ 2.91
PNKP-214ENST00000600573 CADPSQ9ULU8 1353 aa33.13■■■□□ 2.89
PNKP-214ENST00000600573 ABCC8Q09428 1581 aa33.08■■■□□ 2.89
PNKP-214ENST00000600573 WRNQ14191 1432 aaPredicted RBP eCLIP33.06■■■□□ 2.88
PNKP-214ENST00000600573 PRDM2Q13029 1718 aa32.92■■■□□ 2.86
PNKP-214ENST00000600573 LAMC3Q9Y6N6 1575 aa32.83■■■□□ 2.85
PNKP-214ENST00000600573 SYNJ1O43426 1573 aa32.79■■■□□ 2.84
PNKP-214ENST00000600573 TOP2BQ02880 1626 aa32.76■■■□□ 2.84
PNKP-214ENST00000600573 EEA1Q15075 1411 aa32.73■■■□□ 2.83
PNKP-214ENST00000600573 BIVM-ERCC5R4GMW8 1640 aa32.71■■■□□ 2.83
PNKP-214ENST00000600573 FANCD2Q9BXW9 1451 aa32.69■■■□□ 2.82
PNKP-214ENST00000600573 PDS5BQ9NTI5 1447 aa32.64■■■□□ 2.82
PNKP-214ENST00000600573 FAM9AQ8IZU1 332 aaPredicted RBP32.63■■■□□ 2.81
PNKP-214ENST00000600573 NESP48681 1621 aa32.63■■■□□ 2.81
PNKP-214ENST00000600573 CUX1P39880 1505 aa32.62■■■□□ 2.81
PNKP-214ENST00000600573 LOC105371045A0A1W2PR82 267 aa32.56■■■□□ 2.8
PNKP-214ENST00000600573 SOGA1O94964 1423 aa32.54■■■□□ 2.8
PNKP-214ENST00000600573 CEP164Q9UPV0 1460 aa32.5■■■□□ 2.79
PNKP-214ENST00000600573 CSRNP3Q8WYN3 585 aa32.47■■■□□ 2.79
PNKP-214ENST00000600573 DNMBPQ6XZF7 1577 aa32.41■■■□□ 2.78
PNKP-214ENST00000600573 RUSC2Q8N2Y8 1516 aa32.35■■■□□ 2.77
PNKP-214ENST00000600573 TOPBP1Q92547 1522 aa32.32■■■□□ 2.76
PNKP-214ENST00000600573 FGD5Q6ZNL6 1462 aa32.29■■■□□ 2.76
PNKP-214ENST00000600573 KIF27Q86VH2 1401 aa32.29■■■□□ 2.76
PNKP-214ENST00000600573 URB2Q14146 1524 aaKnown RBP32.22■■■□□ 2.75
PNKP-214ENST00000600573 KIF21AQ7Z4S6 1674 aa32.21■■■□□ 2.75
PNKP-214ENST00000600573 POLA1P09884 1462 aaPredicted RBP32.15■■■□□ 2.74
PNKP-214ENST00000600573 GOLGA3Q08378 1498 aa32.15■■■□□ 2.74
PNKP-214ENST00000600573 KIF21BO75037 1637 aa32.14■■■□□ 2.74
PNKP-214ENST00000600573 MRC2Q9UBG0 1479 aa32.13■■■□□ 2.73
PNKP-214ENST00000600573 CUX2O14529 1486 aa32.1■■■□□ 2.73
PNKP-214ENST00000600573 TNIKQ9UKE5 1360 aa32.09■■■□□ 2.73
PNKP-214ENST00000600573 ABCA10Q8WWZ4 1543 aa32.09■■■□□ 2.73
PNKP-214ENST00000600573 ERCC6Q03468 1493 aa32.05■■■□□ 2.72
PNKP-214ENST00000600573 EHMT2Q96KQ7 1210 aa32.04■■■□□ 2.72
PNKP-214ENST00000600573 PRXQ9BXM0 1461 aa32.02■■■□□ 2.72
PNKP-214ENST00000600573 UBTFP17480 764 aaKnown RBP32■■■□□ 2.71
PNKP-214ENST00000600573 RAD54L2Q9Y4B4 1467 aa31.99■■■□□ 2.71
PNKP-214ENST00000600573 ERICH3Q5RHP9 1530 aa31.99■■■□□ 2.71
PNKP-214ENST00000600573 IGF1RP08069 1367 aa31.97■■■□□ 2.71
PNKP-214ENST00000600573 WDR62O43379 1518 aa31.95■■■□□ 2.7
PNKP-214ENST00000600573 RAPGEF2Q9Y4G8 1499 aa31.89■■■□□ 2.7
PNKP-214ENST00000600573 THOC2Q8NI27 1593 aaKnown RBP31.87■■■□□ 2.69
PNKP-214ENST00000600573 WDR97A6NE52 1622 aa31.85■■■□□ 2.69
PNKP-214ENST00000600573 CARMIL1Q5VZK9 1371 aa31.82■■■□□ 2.68
PNKP-214ENST00000600573 CEP162Q5TB80 1403 aa31.81■■■□□ 2.68
PNKP-214ENST00000600573 TARBP1Q13395 1621 aaKnown RBP31.8■■■□□ 2.68
PNKP-214ENST00000600573 IFT140Q96RY7 1462 aa31.8■■■□□ 2.68
PNKP-214ENST00000600573 GAPVD1Q14C86 1478 aa31.75■■■□□ 2.67
PNKP-214ENST00000600573 ABCA5Q8WWZ7 1642 aa31.74■■■□□ 2.67
PNKP-214ENST00000600573 TDRD9Q8NDG6 1382 aaKnown RBP31.72■■■□□ 2.67
PNKP-214ENST00000600573 CUL7Q14999 1698 aa31.7■■■□□ 2.66
PNKP-214ENST00000600573 CLIP1P30622 1438 aa31.61■■■□□ 2.65
PNKP-214ENST00000600573 GRIN2BQ13224 1484 aa31.54■■■□□ 2.64
PNKP-214ENST00000600573 AQRO60306 1485 aaKnown RBP eCLIP31.5■■■□□ 2.632e-6■■■■□ 20.5
PNKP-214ENST00000600573 FHAD1B1AJZ9 1412 aa31.46■■■□□ 2.63
PNKP-214ENST00000600573 ZNF608Q9ULD9 1512 aaPredicted RBP31.44■■■□□ 2.62
PNKP-214ENST00000600573 PBRM1Q86U86 1689 aa31.43■■■□□ 2.62
PNKP-214ENST00000600573 PCGF6Q9BYE7 350 aa31.36■■■□□ 2.61
PNKP-214ENST00000600573 TRIM26Q12899 539 aaPredicted RBP31.35■■■□□ 2.61
PNKP-214ENST00000600573 VPS8Q8N3P4 1428 aa31.35■■■□□ 2.61
PNKP-214ENST00000600573 EIF4G3O43432 1585 aaKnown RBP31.34■■■□□ 2.61
PNKP-214ENST00000600573 ADAMTS12P58397 1594 aa31.33■■■□□ 2.61
PNKP-214ENST00000600573 MAGI1Q96QZ7 1491 aaPredicted RBP31.29■■■□□ 2.6
PNKP-214ENST00000600573 RANGAP1P46060 587 aaPredicted RBP31.28■■■□□ 2.6
PNKP-214ENST00000600573 ARHGAP35Q9NRY4 1499 aa31.25■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms