Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.59■■□□□ 1.85
HDDC3Q8N4P3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HDDC3Q8N4P3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HDDC3Q8N4P3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HDDC3Q8N4P3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
HDDC3Q8N4P3 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
HDDC3Q8N4P3 MIR3648-2-201ENST00000581792 180 ntBASIC26.58■■□□□ 1.85
HDDC3Q8N4P3 AC016575.1-201ENST00000607026 382 ntBASIC26.58■■□□□ 1.85
HDDC3Q8N4P3 MIR3648-1-201ENST00000615959 180 ntBASIC26.58■■□□□ 1.85
HDDC3Q8N4P3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26.58■■□□□ 1.85
HDDC3Q8N4P3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HDDC3Q8N4P3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
HDDC3Q8N4P3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HDDC3Q8N4P3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
HDDC3Q8N4P3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.57■■□□□ 1.84
HDDC3Q8N4P3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC26.55■■□□□ 1.84
HDDC3Q8N4P3 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
HDDC3Q8N4P3 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
HDDC3Q8N4P3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HDDC3Q8N4P3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.54■■□□□ 1.84
HDDC3Q8N4P3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC26.54■■□□□ 1.84
HDDC3Q8N4P3 HSD17B1P1-201ENST00000590052 955 ntBASIC26.54■■□□□ 1.84
HDDC3Q8N4P3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HDDC3Q8N4P3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.53■■□□□ 1.84
HDDC3Q8N4P3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
HDDC3Q8N4P3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC26.53■■□□□ 1.84
HDDC3Q8N4P3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HDDC3Q8N4P3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.52■■□□□ 1.84
HDDC3Q8N4P3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HDDC3Q8N4P3 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC26.51■■□□□ 1.83
HDDC3Q8N4P3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
HDDC3Q8N4P3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HDDC3Q8N4P3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HDDC3Q8N4P3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC26.48■■□□□ 1.83
HDDC3Q8N4P3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
HDDC3Q8N4P3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
HDDC3Q8N4P3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.47■■□□□ 1.83
HDDC3Q8N4P3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.47■■□□□ 1.83
HDDC3Q8N4P3 DUX4L11-201ENST00000611504 1267 ntBASIC26.46■■□□□ 1.83
HDDC3Q8N4P3 DUX4L12-201ENST00000614593 1267 ntBASIC26.46■■□□□ 1.83
HDDC3Q8N4P3 LINC01971-201ENST00000617888 1048 ntBASIC26.46■■□□□ 1.83
HDDC3Q8N4P3 DUX4L14-201ENST00000621227 1267 ntBASIC26.46■■□□□ 1.83
HDDC3Q8N4P3 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
HDDC3Q8N4P3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
HDDC3Q8N4P3 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
HDDC3Q8N4P3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.45■■□□□ 1.82
HDDC3Q8N4P3 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HDDC3Q8N4P3 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
HDDC3Q8N4P3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.43■■□□□ 1.82
HDDC3Q8N4P3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HDDC3Q8N4P3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
HDDC3Q8N4P3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
HDDC3Q8N4P3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HDDC3Q8N4P3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.42■■□□□ 1.82
HDDC3Q8N4P3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
HDDC3Q8N4P3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HDDC3Q8N4P3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.41■■□□□ 1.82
HDDC3Q8N4P3 CR559946.2-201ENST00000623684 991 ntBASIC26.41■■□□□ 1.82
HDDC3Q8N4P3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.4■■□□□ 1.82
HDDC3Q8N4P3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.4■■□□□ 1.82
HDDC3Q8N4P3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
HDDC3Q8N4P3 ABHD17AP3-201ENST00000503096 1137 ntBASIC26.38■■□□□ 1.81
HDDC3Q8N4P3 AC010864.1-201ENST00000609407 1511 ntBASIC26.38■■□□□ 1.81
HDDC3Q8N4P3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
HDDC3Q8N4P3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HDDC3Q8N4P3 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HDDC3Q8N4P3 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
HDDC3Q8N4P3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HDDC3Q8N4P3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
HDDC3Q8N4P3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HDDC3Q8N4P3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
HDDC3Q8N4P3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HDDC3Q8N4P3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.31■■□□□ 1.8
HDDC3Q8N4P3 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
HDDC3Q8N4P3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.3■■□□□ 1.8
HDDC3Q8N4P3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HDDC3Q8N4P3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HDDC3Q8N4P3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
HDDC3Q8N4P3 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
HDDC3Q8N4P3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
HDDC3Q8N4P3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HDDC3Q8N4P3 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
HDDC3Q8N4P3 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HDDC3Q8N4P3 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
HDDC3Q8N4P3 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HDDC3Q8N4P3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HDDC3Q8N4P3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HDDC3Q8N4P3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.25■■□□□ 1.79
HDDC3Q8N4P3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
HDDC3Q8N4P3 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HDDC3Q8N4P3 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.25■■□□□ 1.79
HDDC3Q8N4P3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
HDDC3Q8N4P3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms