Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
FOXA3P55318 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
FOXA3P55318 AL121749.1-202ENST00000609313 2153 ntBASIC19.65■□□□□ 0.74
FOXA3P55318 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
FOXA3P55318 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
FOXA3P55318 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
FOXA3P55318 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
FOXA3P55318 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA3P55318 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.64■□□□□ 0.73
FOXA3P55318 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
FOXA3P55318 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC19.63■□□□□ 0.73
FOXA3P55318 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
FOXA3P55318 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
FOXA3P55318 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA3P55318 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
FOXA3P55318 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
FOXA3P55318 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA3P55318 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
FOXA3P55318 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
FOXA3P55318 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
FOXA3P55318 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
FOXA3P55318 DRD5P2-201ENST00000421395 2012 ntBASIC19.58■□□□□ 0.73
FOXA3P55318 AL139393.2-201ENST00000608721 2025 ntBASIC19.58■□□□□ 0.73
FOXA3P55318 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA3P55318 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
FOXA3P55318 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.57■□□□□ 0.72
FOXA3P55318 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA3P55318 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA3P55318 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
FOXA3P55318 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.57■□□□□ 0.72
FOXA3P55318 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
FOXA3P55318 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
FOXA3P55318 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA3P55318 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA3P55318 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA3P55318 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
FOXA3P55318 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA3P55318 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA3P55318 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
FOXA3P55318 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.55■□□□□ 0.72
FOXA3P55318 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19.54■□□□□ 0.72
FOXA3P55318 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA3P55318 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA3P55318 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA3P55318 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA3P55318 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA3P55318 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA3P55318 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA3P55318 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA3P55318 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA3P55318 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC19.51■□□□□ 0.71
FOXA3P55318 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA3P55318 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
FOXA3P55318 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
FOXA3P55318 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA3P55318 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA3P55318 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA3P55318 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA3P55318 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
FOXA3P55318 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA3P55318 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA3P55318 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.48■□□□□ 0.71
FOXA3P55318 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA3P55318 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA3P55318 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA3P55318 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA3P55318 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA3P55318 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA3P55318 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
FOXA3P55318 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC19.46■□□□□ 0.71
FOXA3P55318 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXA3P55318 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
FOXA3P55318 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA3P55318 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXA3P55318 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA3P55318 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA3P55318 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA3P55318 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA3P55318 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC19.44■□□□□ 0.7
FOXA3P55318 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA3P55318 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA3P55318 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA3P55318 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
FOXA3P55318 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA3P55318 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
FOXA3P55318 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA3P55318 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA3P55318 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA3P55318 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
FOXA3P55318 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC19.39■□□□□ 0.69
FOXA3P55318 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
FOXA3P55318 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.38■□□□□ 0.69
FOXA3P55318 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA3P55318 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.38■□□□□ 0.69
FOXA3P55318 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA3P55318 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA3P55318 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA3P55318 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC19.36■□□□□ 0.69
FOXA3P55318 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA3P55318 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms