Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
RFC3P40938 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
RFC3P40938 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24.1■■□□□ 1.45
RFC3P40938 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC24.1■■□□□ 1.45
RFC3P40938 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RFC3P40938 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RFC3P40938 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
RFC3P40938 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC24.08■■□□□ 1.45
RFC3P40938 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
RFC3P40938 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
RFC3P40938 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RFC3P40938 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RFC3P40938 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RFC3P40938 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
RFC3P40938 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
RFC3P40938 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.06■■□□□ 1.44
RFC3P40938 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RFC3P40938 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC24.05■■□□□ 1.44
RFC3P40938 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
RFC3P40938 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
RFC3P40938 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RFC3P40938 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RFC3P40938 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RFC3P40938 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
RFC3P40938 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RFC3P40938 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC24.01■■□□□ 1.43
RFC3P40938 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.01■■□□□ 1.43
RFC3P40938 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RFC3P40938 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RFC3P40938 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
RFC3P40938 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
RFC3P40938 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.99■■□□□ 1.43
RFC3P40938 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
RFC3P40938 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
RFC3P40938 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.98■■□□□ 1.43
RFC3P40938 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
RFC3P40938 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.95■■□□□ 1.42
RFC3P40938 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.95■■□□□ 1.42
RFC3P40938 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.95■■□□□ 1.42
RFC3P40938 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
RFC3P40938 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.94■■□□□ 1.42
RFC3P40938 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
RFC3P40938 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RFC3P40938 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
RFC3P40938 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
RFC3P40938 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
RFC3P40938 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
RFC3P40938 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC23.91■■□□□ 1.42
RFC3P40938 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
RFC3P40938 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC23.9■■□□□ 1.42
RFC3P40938 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
RFC3P40938 AC010864.1-201ENST00000609407 1511 ntBASIC23.89■■□□□ 1.41
RFC3P40938 DUX4L11-201ENST00000611504 1267 ntBASIC23.88■■□□□ 1.41
RFC3P40938 DUX4L12-201ENST00000614593 1267 ntBASIC23.88■■□□□ 1.41
RFC3P40938 LINC01971-201ENST00000617888 1048 ntBASIC23.88■■□□□ 1.41
RFC3P40938 DUX4L14-201ENST00000621227 1267 ntBASIC23.88■■□□□ 1.41
RFC3P40938 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC23.88■■□□□ 1.41
RFC3P40938 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
RFC3P40938 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.87■■□□□ 1.41
RFC3P40938 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RFC3P40938 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
RFC3P40938 AC016575.1-201ENST00000607026 382 ntBASIC23.86■■□□□ 1.41
RFC3P40938 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC23.85■■□□□ 1.41
RFC3P40938 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.85■■□□□ 1.41
RFC3P40938 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
RFC3P40938 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
RFC3P40938 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
RFC3P40938 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.84■■□□□ 1.41
RFC3P40938 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.84■■□□□ 1.41
RFC3P40938 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.83■■□□□ 1.41
RFC3P40938 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.83■■□□□ 1.41
RFC3P40938 MIR3648-2-201ENST00000581792 180 ntBASIC23.83■■□□□ 1.41
RFC3P40938 MIR3648-1-201ENST00000615959 180 ntBASIC23.83■■□□□ 1.41
RFC3P40938 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.82■■□□□ 1.4
RFC3P40938 CR559946.2-201ENST00000623684 991 ntBASIC23.82■■□□□ 1.4
RFC3P40938 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RFC3P40938 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RFC3P40938 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.79■■□□□ 1.4
RFC3P40938 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RFC3P40938 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.79■■□□□ 1.4
RFC3P40938 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RFC3P40938 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RFC3P40938 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RFC3P40938 MIR639-201ENST00000384974 98 ntBASIC23.77■■□□□ 1.4
RFC3P40938 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.77■■□□□ 1.4
RFC3P40938 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.77■■□□□ 1.4
RFC3P40938 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC23.76■■□□□ 1.39
RFC3P40938 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
RFC3P40938 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms