Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS25Q9BRG1 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 AC116562.4-201ENST00000641316 2276 ntBASIC14.4□□□□□ -0.1
VPS25Q9BRG1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS25Q9BRG1 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 AC063926.3-201ENST00000624734 5658 ntBASIC14.39□□□□□ -0.11
VPS25Q9BRG1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS25Q9BRG1 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VPS25Q9BRG1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 LINC00273-201ENST00000539813 1452 ntBASIC14.37□□□□□ -0.11
VPS25Q9BRG1 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC14.37□□□□□ -0.11
VPS25Q9BRG1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms