RNA–Protein interactions for RNA: ENST00000619587.1

LHX3-203, Transcript of LIM homeobox 3, humanhuman

TSL 1 (best) BASIC

Gene LHX3, Length 2,698 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3-203ENST00000619587 NISCHQ9Y2I1 1504 aa33.37■■■□□ 2.93
LHX3-203ENST00000619587 SHROOM4Q9ULL8 1493 aa29.43■■■□□ 2.3
LHX3-203ENST00000619587 SUPT5HO00267 1087 aaKnown RBP29.2■■■□□ 2.26
LHX3-203ENST00000619587 HRCP23327 699 aa29.16■■■□□ 2.26
LHX3-203ENST00000619587 MYO15BQ96JP2 1530 aa28.87■■■□□ 2.21
LHX3-203ENST00000619587 PCGF6Q9BYE7 350 aa28.71■■■□□ 2.19
LHX3-203ENST00000619587 PPARGC1BQ86YN6 1023 aaKnown RBP28.66■■■□□ 2.18
LHX3-203ENST00000619587 CHIC1Q5VXU3 224 aa28.65■■■□□ 2.18
LHX3-203ENST00000619587 ZCCHC6Q5VYS8 1495 aaKnown RBP28.37■■■□□ 2.13
LHX3-203ENST00000619587 DCAF1Q9Y4B6 1507 aa28.09■■■□□ 2.09
LHX3-203ENST00000619587 PELP1Q8IZL8 1130 aaKnown RBP28.03■■■□□ 2.08
LHX3-203ENST00000619587 LOC105371045A0A1W2PR82 267 aa28■■■□□ 2.07
LHX3-203ENST00000619587 CCDC180Q9P1Z9 1646 aa27.83■■■□□ 2.05
LHX3-203ENST00000619587 DCAF8L2P0C7V8 631 aa27.81■■■□□ 2.04
LHX3-203ENST00000619587 TRIM26Q12899 539 aaPredicted RBP27.79■■■□□ 2.04
LHX3-203ENST00000619587 SCAF1Q9H7N4 1312 aaKnown RBP27.5■■□□□ 1.99
LHX3-203ENST00000619587 ZEB1P37275 1124 aaPredicted RBP27.42■■□□□ 1.98
LHX3-203ENST00000619587 FAM9AQ8IZU1 332 aaPredicted RBP27.02■■□□□ 1.92
LHX3-203ENST00000619587 TRIM41Q8WV44 630 aa26.99■■□□□ 1.91
LHX3-203ENST00000619587 MYT1Q01538 1121 aa26.97■■□□□ 1.91
LHX3-203ENST00000619587 ABCC9O60706 1549 aa26.95■■□□□ 1.9
LHX3-203ENST00000619587 EHMT2Q96KQ7 1210 aa26.93■■□□□ 1.9
LHX3-203ENST00000619587 ACIN1Q9UKV3 1341 aaKnown RBP26.84■■□□□ 1.89
LHX3-203ENST00000619587 NEUROD1Q13562 356 aa26.83■■□□□ 1.89
LHX3-203ENST00000619587 RSF1Q96T23 1441 aaPredicted RBP26.8■■□□□ 1.88
LHX3-203ENST00000619587 RB1CC1Q8TDY2 1594 aa26.73■■□□□ 1.87
LHX3-203ENST00000619587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.71■■□□□ 1.87
LHX3-203ENST00000619587 GTF3C3Q9Y5Q9 886 aa26.64■■□□□ 1.86
LHX3-203ENST00000619587 CCER1Q8TC90 406 aaPredicted RBP26.6■■□□□ 1.85
LHX3-203ENST00000619587 SCRIBQ14160 1630 aa26.54■■□□□ 1.84
LHX3-203ENST00000619587 DIEXFQ68CQ4 756 aaKnown RBP26.52■■□□□ 1.84
LHX3-203ENST00000619587 CENPBP07199 599 aaPredicted RBP26.48■■□□□ 1.83
LHX3-203ENST00000619587 TTBK1Q5TCY1 1321 aaPredicted RBP26.25■■□□□ 1.79
LHX3-203ENST00000619587 CECR2Q9BXF3 1484 aa26.16■■□□□ 1.78
LHX3-203ENST00000619587 YTHDC1Q96MU7 727 aaKnown RBP26.11■■□□□ 1.77
LHX3-203ENST00000619587 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
LHX3-203ENST00000619587 ZNF316A6NFI3 1004 aaPredicted RBP26.05■■□□□ 1.76
LHX3-203ENST00000619587 WIZO95785 1651 aa26.04■■□□□ 1.76
LHX3-203ENST00000619587 WRNQ14191 1432 aaPredicted RBP eCLIP25.98■■□□□ 1.75
LHX3-203ENST00000619587 EIF4G1Q04637 1599 aaKnown RBP25.93■■□□□ 1.74
LHX3-203ENST00000619587 CEP162Q5TB80 1403 aa25.92■■□□□ 1.74
LHX3-203ENST00000619587 MIER1Q8N108 512 aa25.91■■□□□ 1.74
LHX3-203ENST00000619587 ABCC8Q09428 1581 aa25.81■■□□□ 1.72
LHX3-203ENST00000619587 CCDC88BA6NC98 1476 aa25.81■■□□□ 1.72
LHX3-203ENST00000619587 BAZ1AQ9NRL2 1556 aaPredicted RBP25.79■■□□□ 1.72
LHX3-203ENST00000619587 TNIKQ9UKE5 1360 aa25.72■■□□□ 1.71
LHX3-203ENST00000619587 SOGA1O94964 1423 aa25.72■■□□□ 1.71
LHX3-203ENST00000619587 HNRNPUL2Q1KMD3 747 aaKnown RBP25.64■■□□□ 1.7
LHX3-203ENST00000619587 UBTFP17480 764 aaKnown RBP25.63■■□□□ 1.69
LHX3-203ENST00000619587 RUSC2Q8N2Y8 1516 aa25.6■■□□□ 1.69
LHX3-203ENST00000619587 NACADO15069 1562 aa25.58■■□□□ 1.69
LHX3-203ENST00000619587 CSRNP3Q8WYN3 585 aa25.55■■□□□ 1.68
LHX3-203ENST00000619587 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
LHX3-203ENST00000619587 GOLGA3Q08378 1498 aa25.44■■□□□ 1.66
LHX3-203ENST00000619587 SMARCA2P51531 1590 aa25.44■■□□□ 1.66
LHX3-203ENST00000619587 EEA1Q15075 1411 aa25.43■■□□□ 1.66
LHX3-203ENST00000619587 SUPT16HQ9Y5B9 1047 aaKnown RBP25.41■■□□□ 1.66
LHX3-203ENST00000619587 SMARCA4P51532 1647 aa25.27■■□□□ 1.64
LHX3-203ENST00000619587 TSHZ2Q9NRE2 1034 aa25.25■■□□□ 1.63
LHX3-203ENST00000619587 CLIP1P30622 1438 aa25.24■■□□□ 1.63
LHX3-203ENST00000619587 CLSPNQ9HAW4 1339 aa25.23■■□□□ 1.63
LHX3-203ENST00000619587 ANP32EQ9BTT0 268 aa25.2■■□□□ 1.62
LHX3-203ENST00000619587 VPS8Q8N3P4 1428 aa25.2■■□□□ 1.62
LHX3-203ENST00000619587 CEP164Q9UPV0 1460 aa25.18■■□□□ 1.62
LHX3-203ENST00000619587 BCL11AQ9H165 835 aa25.17■■□□□ 1.62
LHX3-203ENST00000619587 APLP2Q06481 763 aa25.15■■□□□ 1.62
LHX3-203ENST00000619587 RANGAP1P46060 587 aaPredicted RBP25.13■■□□□ 1.61
LHX3-203ENST00000619587 KIF21BO75037 1637 aa25.13■■□□□ 1.61
LHX3-203ENST00000619587 DHX57Q6P158 1386 aaKnown RBP25.12■■□□□ 1.61
LHX3-203ENST00000619587 SYNJ1O43426 1573 aa25.04■■□□□ 1.6
LHX3-203ENST00000619587 RAPGEF2Q9Y4G8 1499 aa25.01■■□□□ 1.59
LHX3-203ENST00000619587 KCNH8Q96L42 1107 aa24.99■■□□□ 1.59
LHX3-203ENST00000619587 BAZ1BQ9UIG0 1483 aaKnown RBP24.95■■□□□ 1.58
LHX3-203ENST00000619587 BCANQ96GW7 911 aa24.94■■□□□ 1.58
LHX3-203ENST00000619587 UNC13AQ9UPW8 1703 aa24.85■■□□□ 1.57
LHX3-203ENST00000619587 KANK4Q5T7N3 995 aaPredicted RBP24.85■■□□□ 1.57
LHX3-203ENST00000619587 FKBP8Q14318 412 aa24.79■■□□□ 1.56
LHX3-203ENST00000619587 ARAP1Q96P48 1450 aa24.75■■□□□ 1.55
LHX3-203ENST00000619587 RRBP1Q9P2E9 1410 aaKnown RBP24.71■■□□□ 1.55
LHX3-203ENST00000619587 ITGAEP38570 1179 aa24.69■■□□□ 1.54
LHX3-203ENST00000619587 CUX2O14529 1486 aa24.66■■□□□ 1.54
LHX3-203ENST00000619587 RBM19Q9Y4C8 960 aaKnown RBP24.66■■□□□ 1.54
LHX3-203ENST00000619587 DDX10Q13206 875 aaKnown RBP24.63■■□□□ 1.53
LHX3-203ENST00000619587 PABPN1Q86U42 306 aaKnown RBP eCLIP24.62■■□□□ 1.53
LHX3-203ENST00000619587 CCNB3Q8WWL7 1395 aa24.6■■□□□ 1.53
LHX3-203ENST00000619587 PEG3Q9GZU2 1588 aa24.6■■□□□ 1.53
LHX3-203ENST00000619587 MAPKBP1O60336 1514 aa24.59■■□□□ 1.53
LHX3-203ENST00000619587 RAB3GAP2Q9H2M9 1393 aa24.56■■□□□ 1.52
LHX3-203ENST00000619587 ERICH3Q5RHP9 1530 aa24.55■■□□□ 1.52
LHX3-203ENST00000619587 PRXQ9BXM0 1461 aa24.55■■□□□ 1.52
LHX3-203ENST00000619587 TOP2BQ02880 1626 aa24.55■■□□□ 1.52
LHX3-203ENST00000619587 NEFLP07196 543 aa24.53■■□□□ 1.52
LHX3-203ENST00000619587 TRIM52Q96A61 297 aa24.52■■□□□ 1.52
LHX3-203ENST00000619587 WDR97A6NE52 1622 aa24.51■■□□□ 1.51
LHX3-203ENST00000619587 SIN3AQ96ST3 1273 aa24.47■■□□□ 1.51
LHX3-203ENST00000619587 PPP1R15AO75807 674 aaPredicted RBP24.46■■□□□ 1.51
LHX3-203ENST00000619587 BICRAQ9NZM4 1560 aa24.46■■□□□ 1.51
LHX3-203ENST00000619587 MSH5O43196 834 aa24.46■■□□□ 1.51
LHX3-203ENST00000619587 HIRIP3Q9BW71 556 aaPredicted RBP24.46■■□□□ 1.51
LHX3-203ENST00000619587 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 312 ms