Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LSM1O15116 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LSM1O15116 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LSM1O15116 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.1■□□□□ 0.81
LSM1O15116 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
LSM1O15116 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
LSM1O15116 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.09■□□□□ 0.81
LSM1O15116 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.09■□□□□ 0.81
LSM1O15116 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.09■□□□□ 0.81
LSM1O15116 MIR572-201ENST00000384983 95 ntBASIC20.09■□□□□ 0.81
LSM1O15116 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.09■□□□□ 0.81
LSM1O15116 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
LSM1O15116 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LSM1O15116 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LSM1O15116 RASA4CP-201ENST00000424092 1398 ntBASIC20.08■□□□□ 0.81
LSM1O15116 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LSM1O15116 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
LSM1O15116 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LSM1O15116 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.08■□□□□ 0.81
LSM1O15116 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LSM1O15116 MIR939-201ENST00000401314 82 ntBASIC20.08■□□□□ 0.81
LSM1O15116 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.08■□□□□ 0.81
LSM1O15116 AL355001.2-201ENST00000620617 1191 ntBASIC20.08■□□□□ 0.81
LSM1O15116 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.08■□□□□ 0.8
LSM1O15116 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LSM1O15116 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LSM1O15116 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
LSM1O15116 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
LSM1O15116 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
LSM1O15116 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.07■□□□□ 0.8
LSM1O15116 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.07■□□□□ 0.8
LSM1O15116 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.07■□□□□ 0.8
LSM1O15116 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.07■□□□□ 0.8
LSM1O15116 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.07■□□□□ 0.8
LSM1O15116 AC110285.6-201ENST00000617652 491 ntBASIC20.07■□□□□ 0.8
LSM1O15116 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
LSM1O15116 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LSM1O15116 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
LSM1O15116 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM1O15116 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.06■□□□□ 0.8
LSM1O15116 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.06■□□□□ 0.8
LSM1O15116 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM1O15116 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.06■□□□□ 0.8
LSM1O15116 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM1O15116 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.06■□□□□ 0.8
LSM1O15116 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.06■□□□□ 0.8
LSM1O15116 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.06■□□□□ 0.8
LSM1O15116 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.06■□□□□ 0.8
LSM1O15116 AF213884.3-201ENST00000563833 479 ntBASIC20.06■□□□□ 0.8
LSM1O15116 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.06■□□□□ 0.8
LSM1O15116 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LSM1O15116 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM1O15116 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM1O15116 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.06■□□□□ 0.8
LSM1O15116 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.06■□□□□ 0.8
LSM1O15116 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LSM1O15116 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.05■□□□□ 0.8
LSM1O15116 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.05■□□□□ 0.8
LSM1O15116 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 AC121338.2-201ENST00000622535 1744 ntBASIC20.05■□□□□ 0.8
LSM1O15116 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.05■□□□□ 0.8
LSM1O15116 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LSM1O15116 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.05■□□□□ 0.8
LSM1O15116 AC091305.1-201ENST00000479476 895 ntBASIC20.05■□□□□ 0.8
LSM1O15116 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.05■□□□□ 0.8
LSM1O15116 AL031432.3-201ENST00000607698 485 ntBASIC20.05■□□□□ 0.8
LSM1O15116 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms