RNA–Protein interactions for RNA: ENST00000526627.1

SMIM3-201, Transcript of small integral membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMIM3, Length 2,332 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM3-201ENST00000526627 NISCHQ9Y2I1 1504 aa43.03■■■■■ 4.48
SMIM3-201ENST00000526627 CCDC180Q9P1Z9 1646 aa36.74■■■■□ 3.47
SMIM3-201ENST00000526627 ZCCHC6Q5VYS8 1495 aaKnown RBP36.4■■■■□ 3.42
SMIM3-201ENST00000526627 SHROOM4Q9ULL8 1493 aa36.32■■■■□ 3.41
SMIM3-201ENST00000526627 SUPT5HO00267 1087 aaKnown RBP35.52■■■■□ 3.28
SMIM3-201ENST00000526627 DCAF1Q9Y4B6 1507 aa35.41■■■■□ 3.26
SMIM3-201ENST00000526627 DCAF8L2P0C7V8 631 aa35.38■■■■□ 3.25
SMIM3-201ENST00000526627 CHIC1Q5VXU3 224 aa34.61■■■■□ 3.13
SMIM3-201ENST00000526627 MYO15BQ96JP2 1530 aa34.47■■■■□ 3.11
SMIM3-201ENST00000526627 ABCC9O60706 1549 aa34.31■■■■□ 3.08
SMIM3-201ENST00000526627 SCRIBQ14160 1630 aa34.25■■■■□ 3.07
SMIM3-201ENST00000526627 RSF1Q96T23 1441 aaPredicted RBP33.97■■■■□ 3.03
SMIM3-201ENST00000526627 NACADO15069 1562 aa33.96■■■■□ 3.03
SMIM3-201ENST00000526627 RB1CC1Q8TDY2 1594 aa33.59■■■□□ 2.97
SMIM3-201ENST00000526627 CECR2Q9BXF3 1484 aa33.52■■■□□ 2.96
SMIM3-201ENST00000526627 LOC105371045A0A1W2PR82 267 aa33.5■■■□□ 2.95
SMIM3-201ENST00000526627 MROH2BQ7Z745 1585 aa33.42■■■□□ 2.94
SMIM3-201ENST00000526627 HRCP23327 699 aa33.25■■■□□ 2.91
SMIM3-201ENST00000526627 PCGF6Q9BYE7 350 aa33.24■■■□□ 2.91
SMIM3-201ENST00000526627 WIZO95785 1651 aa33.22■■■□□ 2.91
SMIM3-201ENST00000526627 TRIM41Q8WV44 630 aa33.16■■■□□ 2.9
SMIM3-201ENST00000526627 BAZ1AQ9NRL2 1556 aaPredicted RBP33.06■■■□□ 2.88
SMIM3-201ENST00000526627 UNC13AQ9UPW8 1703 aa32.95■■■□□ 2.87
SMIM3-201ENST00000526627 EIF4G1Q04637 1599 aaKnown RBP32.84■■■□□ 2.85
SMIM3-201ENST00000526627 SMARCA4P51532 1647 aa32.81■■■□□ 2.84
SMIM3-201ENST00000526627 FAM9AQ8IZU1 332 aaPredicted RBP32.79■■■□□ 2.84
SMIM3-201ENST00000526627 TOP2AP11388 1531 aaKnown RBP32.75■■■□□ 2.83
SMIM3-201ENST00000526627 TRIM26Q12899 539 aaPredicted RBP32.75■■■□□ 2.83
SMIM3-201ENST00000526627 SMARCA2P51531 1590 aa32.56■■■□□ 2.8
SMIM3-201ENST00000526627 CCDC88BA6NC98 1476 aa32.56■■■□□ 2.8
SMIM3-201ENST00000526627 BICRAQ9NZM4 1560 aa32.55■■■□□ 2.8
SMIM3-201ENST00000526627 PPARGC1BQ86YN6 1023 aaKnown RBP32.5■■■□□ 2.79
SMIM3-201ENST00000526627 EHMT2Q96KQ7 1210 aa32.42■■■□□ 2.78
SMIM3-201ENST00000526627 PABPN1Q86U42 306 aaKnown RBP eCLIP32.38■■■□□ 2.77
SMIM3-201ENST00000526627 ABCC8Q09428 1581 aa32.38■■■□□ 2.77
SMIM3-201ENST00000526627 PEG3Q9GZU2 1588 aa32.26■■■□□ 2.75
SMIM3-201ENST00000526627 SOGA1O94964 1423 aa32.04■■■□□ 2.72
SMIM3-201ENST00000526627 ATAD2BQ9ULI0 1458 aa31.98■■■□□ 2.71
SMIM3-201ENST00000526627 ZEB1P37275 1124 aaPredicted RBP31.95■■■□□ 2.71
SMIM3-201ENST00000526627 EEA1Q15075 1411 aa31.92■■■□□ 2.7
SMIM3-201ENST00000526627 RUSC2Q8N2Y8 1516 aa31.91■■■□□ 2.7
SMIM3-201ENST00000526627 WRNQ14191 1432 aaPredicted RBP eCLIP31.87■■■□□ 2.69
SMIM3-201ENST00000526627 BAZ1BQ9UIG0 1483 aaKnown RBP31.84■■■□□ 2.69
SMIM3-201ENST00000526627 TNIKQ9UKE5 1360 aa31.83■■■□□ 2.69
SMIM3-201ENST00000526627 CEP162Q5TB80 1403 aa31.82■■■□□ 2.69
SMIM3-201ENST00000526627 CSRNP3Q8WYN3 585 aa31.82■■■□□ 2.68
SMIM3-201ENST00000526627 SYNJ1O43426 1573 aa31.76■■■□□ 2.68
SMIM3-201ENST00000526627 GOLGA3Q08378 1498 aa31.66■■■□□ 2.66
SMIM3-201ENST00000526627 UBTFP17480 764 aaKnown RBP31.57■■■□□ 2.64
SMIM3-201ENST00000526627 KIF21BO75037 1637 aa31.53■■■□□ 2.64
SMIM3-201ENST00000526627 CEP164Q9UPV0 1460 aa31.5■■■□□ 2.63
SMIM3-201ENST00000526627 HMGXB3Q12766 1538 aa31.42■■■□□ 2.62
SMIM3-201ENST00000526627 NCAPD3P42695 1498 aa31.42■■■□□ 2.62
SMIM3-201ENST00000526627 TOP2BQ02880 1626 aa31.42■■■□□ 2.62
SMIM3-201ENST00000526627 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.4■■■□□ 2.62
SMIM3-201ENST00000526627 TTBK1Q5TCY1 1321 aaPredicted RBP31.36■■■□□ 2.61
SMIM3-201ENST00000526627 BIVM-ERCC5R4GMW8 1640 aa31.34■■■□□ 2.61
SMIM3-201ENST00000526627 CCER1Q8TC90 406 aaPredicted RBP31.29■■■□□ 2.6
SMIM3-201ENST00000526627 RAPGEF2Q9Y4G8 1499 aa31.29■■■□□ 2.6
SMIM3-201ENST00000526627 CLIP1P30622 1438 aa31.26■■■□□ 2.59
SMIM3-201ENST00000526627 VPS8Q8N3P4 1428 aa31.14■■■□□ 2.58
SMIM3-201ENST00000526627 CUX1P39880 1505 aa31.14■■■□□ 2.57
SMIM3-201ENST00000526627 CFTRP13569 1480 aa31.12■■■□□ 2.57
SMIM3-201ENST00000526627 PRXQ9BXM0 1461 aa31.07■■■□□ 2.56
SMIM3-201ENST00000526627 ERICH3Q5RHP9 1530 aa31.05■■■□□ 2.56
SMIM3-201ENST00000526627 PRDM2Q13029 1718 aa30.91■■■□□ 2.54
SMIM3-201ENST00000526627 KIF27Q86VH2 1401 aa30.9■■■□□ 2.54
SMIM3-201ENST00000526627 RANGAP1P46060 587 aaPredicted RBP30.87■■■□□ 2.53
SMIM3-201ENST00000526627 ARAP1Q96P48 1450 aa30.85■■■□□ 2.53
SMIM3-201ENST00000526627 APLP2Q06481 763 aa30.81■■■□□ 2.52
SMIM3-201ENST00000526627 HNRNPUL2Q1KMD3 747 aaKnown RBP30.77■■■□□ 2.52
SMIM3-201ENST00000526627 CADPSQ9ULU8 1353 aa30.75■■■□□ 2.51
SMIM3-201ENST00000526627 CC2D2AQ9P2K1 1620 aa30.66■■■□□ 2.5
SMIM3-201ENST00000526627 CUX2O14529 1486 aa30.62■■■□□ 2.49
SMIM3-201ENST00000526627 DIEXFQ68CQ4 756 aaKnown RBP30.62■■■□□ 2.49
SMIM3-201ENST00000526627 IGF1RP08069 1367 aa30.6■■■□□ 2.49
SMIM3-201ENST00000526627 ARHGAP35Q9NRY4 1499 aa30.59■■■□□ 2.49
SMIM3-201ENST00000526627 FGD5Q6ZNL6 1462 aa30.57■■■□□ 2.48
SMIM3-201ENST00000526627 KANK4Q5T7N3 995 aaPredicted RBP30.56■■■□□ 2.48
SMIM3-201ENST00000526627 SCAF1Q9H7N4 1312 aaKnown RBP30.48■■■□□ 2.47
SMIM3-201ENST00000526627 ZNF316A6NFI3 1004 aaPredicted RBP30.48■■■□□ 2.47
SMIM3-201ENST00000526627 FANCD2Q9BXW9 1451 aa30.44■■■□□ 2.46
SMIM3-201ENST00000526627 CARMIL1Q5VZK9 1371 aa30.43■■■□□ 2.46
SMIM3-201ENST00000526627 RRBP1Q9P2E9 1410 aaKnown RBP30.43■■■□□ 2.46
SMIM3-201ENST00000526627 DNMBPQ6XZF7 1577 aa30.33■■■□□ 2.45
SMIM3-201ENST00000526627 DHX57Q6P158 1386 aaKnown RBP30.3■■■□□ 2.44
SMIM3-201ENST00000526627 ACIN1Q9UKV3 1341 aaKnown RBP30.28■■■□□ 2.44
SMIM3-201ENST00000526627 MAP3K1Q13233 1512 aa30.26■■■□□ 2.44
SMIM3-201ENST00000526627 TOPBP1Q92547 1522 aa30.26■■■□□ 2.43
SMIM3-201ENST00000526627 CLSPNQ9HAW4 1339 aa30.26■■■□□ 2.43
SMIM3-201ENST00000526627 NESP48681 1621 aa30.26■■■□□ 2.43
SMIM3-201ENST00000526627 ABCA10Q8WWZ4 1543 aa30.25■■■□□ 2.43
SMIM3-201ENST00000526627 RAD54L2Q9Y4B4 1467 aa30.25■■■□□ 2.43
SMIM3-201ENST00000526627 CCNB3Q8WWL7 1395 aa30.25■■■□□ 2.43
SMIM3-201ENST00000526627 TIAM1Q13009 1591 aa30.24■■■□□ 2.43
SMIM3-201ENST00000526627 NEUROD1Q13562 356 aa30.24■■■□□ 2.43
SMIM3-201ENST00000526627 POLA1P09884 1462 aaPredicted RBP30.23■■■□□ 2.43
SMIM3-201ENST00000526627 LRRC9Q6ZRR7 1453 aa30.11■■■□□ 2.41
SMIM3-201ENST00000526627 FHAD1B1AJZ9 1412 aa30.09■■■□□ 2.41
SMIM3-201ENST00000526627 LAMC3Q9Y6N6 1575 aa30.08■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms