Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC41.97■■■■■ 4.31
COL17A1Q9UMD9 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC41.96■■■■■ 4.31
COL17A1Q9UMD9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC41.96■■■■■ 4.31
COL17A1Q9UMD9 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC41.95■■■■■ 4.31
COL17A1Q9UMD9 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC41.95■■■■■ 4.31
COL17A1Q9UMD9 RARRES2P2-201ENST00000394842 485 ntBASIC41.95■■■■■ 4.31
COL17A1Q9UMD9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC41.93■■■■■ 4.3
COL17A1Q9UMD9 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC41.92■■■■■ 4.3
COL17A1Q9UMD9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC41.91■■■■■ 4.3
COL17A1Q9UMD9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC41.91■■■■■ 4.3
COL17A1Q9UMD9 ABHD17AP5-201ENST00000580133 923 ntBASIC41.9■■■■■ 4.3
COL17A1Q9UMD9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC41.87■■■■■ 4.29
COL17A1Q9UMD9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC41.86■■■■■ 4.29
COL17A1Q9UMD9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC41.85■■■■■ 4.29
COL17A1Q9UMD9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC41.85■■■■■ 4.29
COL17A1Q9UMD9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC41.84■■■■■ 4.29
COL17A1Q9UMD9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC41.81■■■■■ 4.28
COL17A1Q9UMD9 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC41.8■■■■■ 4.28
COL17A1Q9UMD9 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC41.8■■■■■ 4.28
COL17A1Q9UMD9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC41.79■■■■■ 4.28
COL17A1Q9UMD9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC41.79■■■■■ 4.28
COL17A1Q9UMD9 AC108673.1-201ENST00000510422 1159 ntBASIC41.78■■■■■ 4.28
COL17A1Q9UMD9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC41.78■■■■■ 4.28
COL17A1Q9UMD9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC41.75■■■■■ 4.27
COL17A1Q9UMD9 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC41.75■■■■■ 4.27
COL17A1Q9UMD9 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC41.75■■■■■ 4.27
COL17A1Q9UMD9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC41.73■■■■■ 4.27
COL17A1Q9UMD9 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC41.72■■■■■ 4.27
COL17A1Q9UMD9 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC41.72■■■■■ 4.27
COL17A1Q9UMD9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC41.71■■■■■ 4.27
COL17A1Q9UMD9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC41.71■■■■■ 4.27
COL17A1Q9UMD9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC41.7■■■■■ 4.27
COL17A1Q9UMD9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC41.69■■■■■ 4.26
COL17A1Q9UMD9 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC41.69■■■■■ 4.26
COL17A1Q9UMD9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC41.66■■■■■ 4.26
COL17A1Q9UMD9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC41.64■■■■■ 4.26
COL17A1Q9UMD9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC41.63■■■■■ 4.25
COL17A1Q9UMD9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC41.62■■■■■ 4.25
COL17A1Q9UMD9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC41.62■■■■■ 4.25
COL17A1Q9UMD9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC41.6■■■■■ 4.25
COL17A1Q9UMD9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC41.6■■■■■ 4.25
COL17A1Q9UMD9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC41.6■■■■■ 4.25
COL17A1Q9UMD9 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC41.59■■■■■ 4.25
COL17A1Q9UMD9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC41.59■■■■■ 4.25
COL17A1Q9UMD9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC41.59■■■■■ 4.25
COL17A1Q9UMD9 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC41.57■■■■■ 4.24
COL17A1Q9UMD9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC41.56■■■■■ 4.24
COL17A1Q9UMD9 DUX4L13-201ENST00000554103 1267 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L15-201ENST00000611059 1267 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L23-201ENST00000615195 1269 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L24-201ENST00000617576 1269 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L22-201ENST00000618238 1269 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L20-201ENST00000619712 1269 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L21-201ENST00000622058 1269 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L10-201ENST00000622460 1267 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 DUX4L25-201ENST00000624915 1269 ntBASIC41.54■■■■■ 4.24
COL17A1Q9UMD9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC41.53■■■■■ 4.24
COL17A1Q9UMD9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC41.53■■■■■ 4.24
COL17A1Q9UMD9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC41.53■■■■■ 4.24
COL17A1Q9UMD9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC41.52■■■■■ 4.24
COL17A1Q9UMD9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC41.52■■■■■ 4.24
COL17A1Q9UMD9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC41.52■■■■■ 4.24
COL17A1Q9UMD9 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC41.5■■■■■ 4.23
COL17A1Q9UMD9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC41.5■■■■■ 4.23
COL17A1Q9UMD9 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC41.47■■■■■ 4.23
COL17A1Q9UMD9 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC41.47■■■■■ 4.23
COL17A1Q9UMD9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC41.46■■■■■ 4.23
COL17A1Q9UMD9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC41.46■■■■■ 4.23
COL17A1Q9UMD9 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC41.46■■■■■ 4.23
COL17A1Q9UMD9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC41.45■■■■■ 4.23
COL17A1Q9UMD9 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC41.45■■■■■ 4.23
COL17A1Q9UMD9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC41.45■■■■■ 4.23
COL17A1Q9UMD9 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 GPX1-201ENST00000419349 1106 ntBASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC41.44■■■■■ 4.22
COL17A1Q9UMD9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC41.43■■■■■ 4.22
COL17A1Q9UMD9 HES6-205ENST00000409356 528 ntTSL 2 BASIC41.43■■■■■ 4.22
COL17A1Q9UMD9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC41.42■■■■■ 4.22
COL17A1Q9UMD9 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC41.42■■■■■ 4.22
COL17A1Q9UMD9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC41.41■■■■■ 4.22
COL17A1Q9UMD9 RNF126P1-201ENST00000567452 1320 ntBASIC41.41■■■■■ 4.22
COL17A1Q9UMD9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC41.4■■■■■ 4.22
COL17A1Q9UMD9 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC41.39■■■■■ 4.22
COL17A1Q9UMD9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC41.38■■■■■ 4.22
COL17A1Q9UMD9 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC41.38■■■■■ 4.22
COL17A1Q9UMD9 AC012354.3-201ENST00000623734 483 ntBASIC41.35■■■■■ 4.21
COL17A1Q9UMD9 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC41.35■■■■■ 4.21
COL17A1Q9UMD9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC41.35■■■■■ 4.21
COL17A1Q9UMD9 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC41.34■■■■■ 4.21
COL17A1Q9UMD9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC41.34■■■■■ 4.21
COL17A1Q9UMD9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC41.33■■■■■ 4.21
COL17A1Q9UMD9 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC41.32■■■■■ 4.21
COL17A1Q9UMD9 NTF6A-201ENST00000591175 560 ntBASIC41.32■■■■■ 4.2
Retrieved 100 of 98,524 protein–RNA pairs in 835.4 ms