Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RNF126P1-201ENST00000567452 1320 ntBASIC24.11■■□□□ 1.45
COL12A1Q99715 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
COL12A1Q99715 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
COL12A1Q99715 DUX4L11-201ENST00000611504 1267 ntBASIC24.09■■□□□ 1.45
COL12A1Q99715 DUX4L12-201ENST00000614593 1267 ntBASIC24.09■■□□□ 1.45
COL12A1Q99715 DUX4L14-201ENST00000621227 1267 ntBASIC24.09■■□□□ 1.45
COL12A1Q99715 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
COL12A1Q99715 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC24.09■■□□□ 1.45
COL12A1Q99715 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
COL12A1Q99715 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
COL12A1Q99715 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.05■■□□□ 1.44
COL12A1Q99715 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
COL12A1Q99715 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL12A1Q99715 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL12A1Q99715 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL12A1Q99715 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.04■■□□□ 1.44
COL12A1Q99715 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
COL12A1Q99715 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL12A1Q99715 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
COL12A1Q99715 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.02■■□□□ 1.44
COL12A1Q99715 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
COL12A1Q99715 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.02■■□□□ 1.44
COL12A1Q99715 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
COL12A1Q99715 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
COL12A1Q99715 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL12A1Q99715 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC24■■□□□ 1.43
COL12A1Q99715 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC24■■□□□ 1.43
COL12A1Q99715 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC24■■□□□ 1.43
COL12A1Q99715 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
COL12A1Q99715 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL12A1Q99715 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL12A1Q99715 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL12A1Q99715 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.99■■□□□ 1.43
COL12A1Q99715 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.98■■□□□ 1.43
COL12A1Q99715 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
COL12A1Q99715 MIR6090-201ENST00000622481 60 ntBASIC23.97■■□□□ 1.43
COL12A1Q99715 AC019069.1-201ENST00000610008 1333 ntBASIC23.97■■□□□ 1.43
COL12A1Q99715 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.97■■□□□ 1.43
COL12A1Q99715 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL12A1Q99715 AC018358.1-201ENST00000631079 1402 ntBASIC23.94■■□□□ 1.42
COL12A1Q99715 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL12A1Q99715 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL12A1Q99715 NTF6A-201ENST00000591175 560 ntBASIC23.93■■□□□ 1.42
COL12A1Q99715 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.9■■□□□ 1.42
COL12A1Q99715 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL12A1Q99715 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL12A1Q99715 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL12A1Q99715 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL12A1Q99715 AL592295.1-201ENST00000400984 884 ntBASIC23.89■■□□□ 1.42
COL12A1Q99715 GPX1-201ENST00000419349 1106 ntBASIC23.89■■□□□ 1.42
COL12A1Q99715 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.89■■□□□ 1.42
COL12A1Q99715 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
COL12A1Q99715 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.89■■□□□ 1.41
COL12A1Q99715 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL12A1Q99715 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL12A1Q99715 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.88■■□□□ 1.41
COL12A1Q99715 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL12A1Q99715 DUX4L13-201ENST00000554103 1267 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L15-201ENST00000611059 1267 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L23-201ENST00000615195 1269 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L24-201ENST00000617576 1269 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L22-201ENST00000618238 1269 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L20-201ENST00000619712 1269 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L21-201ENST00000622058 1269 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L10-201ENST00000622460 1267 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 DUX4L25-201ENST00000624915 1269 ntBASIC23.87■■□□□ 1.41
COL12A1Q99715 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL12A1Q99715 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL12A1Q99715 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.86■■□□□ 1.41
COL12A1Q99715 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.86■■□□□ 1.41
COL12A1Q99715 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.85■■□□□ 1.41
COL12A1Q99715 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL12A1Q99715 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
COL12A1Q99715 AC012354.3-201ENST00000623734 483 ntBASIC23.85■■□□□ 1.41
COL12A1Q99715 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
COL12A1Q99715 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
COL12A1Q99715 WASH5P-204ENST00000632292 975 ntBASIC23.83■■□□□ 1.41
COL12A1Q99715 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL12A1Q99715 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL12A1Q99715 AC008813.1-201ENST00000536597 885 ntBASIC23.82■■□□□ 1.4
COL12A1Q99715 AL033527.3-201ENST00000566366 1196 ntBASIC23.82■■□□□ 1.4
COL12A1Q99715 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.82■■□□□ 1.4
COL12A1Q99715 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC23.81■■□□□ 1.4
COL12A1Q99715 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.8■■□□□ 1.4
COL12A1Q99715 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL12A1Q99715 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL12A1Q99715 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.8■■□□□ 1.4
COL12A1Q99715 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
COL12A1Q99715 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC23.78■■□□□ 1.4
COL12A1Q99715 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
COL12A1Q99715 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL12A1Q99715 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL12A1Q99715 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms