Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 DUX4L12-201ENST00000614593 1267 ntBASIC18.65■□□□□ 0.58
ALMS1Q8TCU4 DUX4L14-201ENST00000621227 1267 ntBASIC18.65■□□□□ 0.58
ALMS1Q8TCU4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
ALMS1Q8TCU4 RARRES2P2-201ENST00000394842 485 ntBASIC18.63■□□□□ 0.57
ALMS1Q8TCU4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.63■□□□□ 0.57
ALMS1Q8TCU4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC18.63■□□□□ 0.57
ALMS1Q8TCU4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC18.63■□□□□ 0.57
ALMS1Q8TCU4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ALMS1Q8TCU4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ALMS1Q8TCU4 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L13-201ENST00000554103 1267 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L15-201ENST00000611059 1267 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L23-201ENST00000615195 1269 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L24-201ENST00000617576 1269 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L22-201ENST00000618238 1269 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L20-201ENST00000619712 1269 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L21-201ENST00000622058 1269 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L10-201ENST00000622460 1267 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 DUX4L25-201ENST00000624915 1269 ntBASIC18.61■□□□□ 0.57
ALMS1Q8TCU4 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ALMS1Q8TCU4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ALMS1Q8TCU4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
ALMS1Q8TCU4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ALMS1Q8TCU4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
ALMS1Q8TCU4 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ALMS1Q8TCU4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ALMS1Q8TCU4 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ALMS1Q8TCU4 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ALMS1Q8TCU4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ALMS1Q8TCU4 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ALMS1Q8TCU4 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ALMS1Q8TCU4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ALMS1Q8TCU4 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ALMS1Q8TCU4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
ALMS1Q8TCU4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
ALMS1Q8TCU4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
ALMS1Q8TCU4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ALMS1Q8TCU4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
ALMS1Q8TCU4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
ALMS1Q8TCU4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
ALMS1Q8TCU4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC18.54■□□□□ 0.56
ALMS1Q8TCU4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
ALMS1Q8TCU4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ALMS1Q8TCU4 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
ALMS1Q8TCU4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
ALMS1Q8TCU4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC18.52■□□□□ 0.56
ALMS1Q8TCU4 METRNL-202ENST00000570778 967 ntTSL 5 BASIC18.52■□□□□ 0.56
ALMS1Q8TCU4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ALMS1Q8TCU4 ABHD17AP5-201ENST00000580133 923 ntBASIC18.51■□□□□ 0.55
ALMS1Q8TCU4 AC108673.1-201ENST00000510422 1159 ntBASIC18.51■□□□□ 0.55
ALMS1Q8TCU4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.5■□□□□ 0.55
ALMS1Q8TCU4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
ALMS1Q8TCU4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ALMS1Q8TCU4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC18.49■□□□□ 0.55
ALMS1Q8TCU4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
ALMS1Q8TCU4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC18.49■□□□□ 0.55
ALMS1Q8TCU4 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ALMS1Q8TCU4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC18.49■□□□□ 0.55
ALMS1Q8TCU4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ALMS1Q8TCU4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ALMS1Q8TCU4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ALMS1Q8TCU4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.47■□□□□ 0.55
ALMS1Q8TCU4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC18.46■□□□□ 0.55
ALMS1Q8TCU4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC18.45■□□□□ 0.54
ALMS1Q8TCU4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
ALMS1Q8TCU4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
ALMS1Q8TCU4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
ALMS1Q8TCU4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC18.44■□□□□ 0.54
ALMS1Q8TCU4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC18.44■□□□□ 0.54
ALMS1Q8TCU4 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
ALMS1Q8TCU4 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
ALMS1Q8TCU4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC18.43■□□□□ 0.54
ALMS1Q8TCU4 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC18.43■□□□□ 0.54
ALMS1Q8TCU4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.42■□□□□ 0.54
ALMS1Q8TCU4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ALMS1Q8TCU4 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ALMS1Q8TCU4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC18.42■□□□□ 0.54
ALMS1Q8TCU4 HES6-205ENST00000409356 528 ntTSL 2 BASIC18.41■□□□□ 0.54
ALMS1Q8TCU4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ALMS1Q8TCU4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
ALMS1Q8TCU4 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC18.38■□□□□ 0.53
ALMS1Q8TCU4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ALMS1Q8TCU4 RNF126P1-201ENST00000567452 1320 ntBASIC18.38■□□□□ 0.53
ALMS1Q8TCU4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ALMS1Q8TCU4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ALMS1Q8TCU4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ALMS1Q8TCU4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ALMS1Q8TCU4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC18.37■□□□□ 0.53
ALMS1Q8TCU4 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ALMS1Q8TCU4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms