Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
LRRK1Q38SD2 AL161658.1-201ENST00000623641 1967 ntBASIC26.66■■□□□ 1.86
LRRK1Q38SD2 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
LRRK1Q38SD2 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
LRRK1Q38SD2 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
LRRK1Q38SD2 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
LRRK1Q38SD2 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
LRRK1Q38SD2 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
LRRK1Q38SD2 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.64■■□□□ 1.85
LRRK1Q38SD2 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.64■■□□□ 1.85
LRRK1Q38SD2 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
LRRK1Q38SD2 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
LRRK1Q38SD2 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
LRRK1Q38SD2 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
LRRK1Q38SD2 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.62■■□□□ 1.85
LRRK1Q38SD2 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
LRRK1Q38SD2 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
LRRK1Q38SD2 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
LRRK1Q38SD2 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
LRRK1Q38SD2 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
LRRK1Q38SD2 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
LRRK1Q38SD2 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
LRRK1Q38SD2 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
LRRK1Q38SD2 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
LRRK1Q38SD2 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.6■■□□□ 1.85
LRRK1Q38SD2 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
LRRK1Q38SD2 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
LRRK1Q38SD2 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
LRRK1Q38SD2 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
LRRK1Q38SD2 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.57■■□□□ 1.84
LRRK1Q38SD2 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
LRRK1Q38SD2 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.56■■□□□ 1.84
LRRK1Q38SD2 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
LRRK1Q38SD2 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
LRRK1Q38SD2 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
LRRK1Q38SD2 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.55■■□□□ 1.84
LRRK1Q38SD2 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
LRRK1Q38SD2 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
LRRK1Q38SD2 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.55■■□□□ 1.84
LRRK1Q38SD2 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.54■■□□□ 1.84
LRRK1Q38SD2 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
LRRK1Q38SD2 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
LRRK1Q38SD2 MLEC-202ENST00000412616 841 ntTSL 3 BASIC26.53■■□□□ 1.84
LRRK1Q38SD2 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
LRRK1Q38SD2 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
LRRK1Q38SD2 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.53■■□□□ 1.84
LRRK1Q38SD2 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
LRRK1Q38SD2 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
LRRK1Q38SD2 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.51■■□□□ 1.83
LRRK1Q38SD2 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.51■■□□□ 1.83
LRRK1Q38SD2 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
LRRK1Q38SD2 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
LRRK1Q38SD2 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
LRRK1Q38SD2 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
LRRK1Q38SD2 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.49■■□□□ 1.83
LRRK1Q38SD2 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
LRRK1Q38SD2 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
LRRK1Q38SD2 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.48■■□□□ 1.83
LRRK1Q38SD2 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
LRRK1Q38SD2 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
LRRK1Q38SD2 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
LRRK1Q38SD2 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
LRRK1Q38SD2 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.47■■□□□ 1.83
LRRK1Q38SD2 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
LRRK1Q38SD2 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
LRRK1Q38SD2 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
LRRK1Q38SD2 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.83
LRRK1Q38SD2 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
LRRK1Q38SD2 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
LRRK1Q38SD2 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
LRRK1Q38SD2 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
LRRK1Q38SD2 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
LRRK1Q38SD2 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.44■■□□□ 1.82
LRRK1Q38SD2 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.44■■□□□ 1.82
LRRK1Q38SD2 AC108673.1-201ENST00000510422 1159 ntBASIC26.43■■□□□ 1.82
LRRK1Q38SD2 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
LRRK1Q38SD2 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.43■■□□□ 1.82
LRRK1Q38SD2 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.43■■□□□ 1.82
LRRK1Q38SD2 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC26.43■■□□□ 1.82
LRRK1Q38SD2 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
LRRK1Q38SD2 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.42■■□□□ 1.82
LRRK1Q38SD2 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC26.41■■□□□ 1.82
LRRK1Q38SD2 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.4■■□□□ 1.82
LRRK1Q38SD2 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
LRRK1Q38SD2 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
LRRK1Q38SD2 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.39■■□□□ 1.82
LRRK1Q38SD2 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.82
LRRK1Q38SD2 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
LRRK1Q38SD2 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.38■■□□□ 1.81
LRRK1Q38SD2 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
LRRK1Q38SD2 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.38■■□□□ 1.81
LRRK1Q38SD2 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
LRRK1Q38SD2 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.37■■□□□ 1.81
LRRK1Q38SD2 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
LRRK1Q38SD2 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.36■■□□□ 1.81
LRRK1Q38SD2 MIR6090-201ENST00000622481 60 ntBASIC26.35■■□□□ 1.81
LRRK1Q38SD2 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
LRRK1Q38SD2 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
LRRK1Q38SD2 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
LRRK1Q38SD2 AC010864.1-201ENST00000609407 1511 ntBASIC26.33■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms