Protein–RNA interactions for Protein: P48230

TM4SF4, Transmembrane 4 L6 family member 4, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF4P48230 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
TM4SF4P48230 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.63■■■□□ 2.65
TM4SF4P48230 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC31.63■■■□□ 2.65
TM4SF4P48230 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
TM4SF4P48230 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
TM4SF4P48230 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.62■■■□□ 2.65
TM4SF4P48230 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.61■■■□□ 2.65
TM4SF4P48230 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
TM4SF4P48230 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
TM4SF4P48230 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
TM4SF4P48230 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
TM4SF4P48230 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
TM4SF4P48230 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.6■■■□□ 2.65
TM4SF4P48230 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.58■■■□□ 2.65
TM4SF4P48230 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.57■■■□□ 2.64
TM4SF4P48230 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
TM4SF4P48230 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
TM4SF4P48230 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.54■■■□□ 2.64
TM4SF4P48230 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
TM4SF4P48230 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
TM4SF4P48230 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
TM4SF4P48230 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
TM4SF4P48230 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
TM4SF4P48230 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
TM4SF4P48230 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.5■■■□□ 2.63
TM4SF4P48230 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
TM4SF4P48230 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.48■■■□□ 2.63
TM4SF4P48230 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
TM4SF4P48230 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
TM4SF4P48230 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
TM4SF4P48230 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.46■■■□□ 2.63
TM4SF4P48230 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
TM4SF4P48230 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.45■■■□□ 2.63
TM4SF4P48230 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.45■■■□□ 2.63
TM4SF4P48230 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.45■■■□□ 2.62
TM4SF4P48230 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
TM4SF4P48230 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
TM4SF4P48230 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.43■■■□□ 2.62
TM4SF4P48230 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.42■■■□□ 2.62
TM4SF4P48230 METRNL-202ENST00000570778 967 ntTSL 5 BASIC31.42■■■□□ 2.62
TM4SF4P48230 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.41■■■□□ 2.62
TM4SF4P48230 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
TM4SF4P48230 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
TM4SF4P48230 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
TM4SF4P48230 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.38■■■□□ 2.61
TM4SF4P48230 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
TM4SF4P48230 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.61
TM4SF4P48230 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.36■■■□□ 2.61
TM4SF4P48230 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
TM4SF4P48230 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L13-201ENST00000554103 1267 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L15-201ENST00000611059 1267 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L23-201ENST00000615195 1269 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L24-201ENST00000617576 1269 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L22-201ENST00000618238 1269 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L20-201ENST00000619712 1269 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L21-201ENST00000622058 1269 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L10-201ENST00000622460 1267 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 DUX4L25-201ENST00000624915 1269 ntBASIC31.35■■■□□ 2.61
TM4SF4P48230 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
TM4SF4P48230 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
TM4SF4P48230 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.33■■■□□ 2.61
TM4SF4P48230 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
TM4SF4P48230 RARRES2P2-201ENST00000394842 485 ntBASIC31.31■■■□□ 2.6
TM4SF4P48230 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
TM4SF4P48230 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
TM4SF4P48230 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
TM4SF4P48230 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
TM4SF4P48230 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
TM4SF4P48230 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
TM4SF4P48230 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
TM4SF4P48230 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.28■■■□□ 2.6
TM4SF4P48230 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
TM4SF4P48230 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
TM4SF4P48230 HES6-205ENST00000409356 528 ntTSL 2 BASIC31.27■■■□□ 2.6
TM4SF4P48230 ABHD17AP5-201ENST00000580133 923 ntBASIC31.27■■■□□ 2.6
TM4SF4P48230 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.27■■■□□ 2.6
TM4SF4P48230 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.26■■■□□ 2.59
TM4SF4P48230 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.25■■■□□ 2.59
TM4SF4P48230 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.24■■■□□ 2.59
TM4SF4P48230 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.24■■■□□ 2.59
TM4SF4P48230 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC31.24■■■□□ 2.59
TM4SF4P48230 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
TM4SF4P48230 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
TM4SF4P48230 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
TM4SF4P48230 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.19■■■□□ 2.58
TM4SF4P48230 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.18■■■□□ 2.58
TM4SF4P48230 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
TM4SF4P48230 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.17■■■□□ 2.58
TM4SF4P48230 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC31.17■■■□□ 2.58
TM4SF4P48230 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
TM4SF4P48230 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.16■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms