Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
TMEM88BA6NKF7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.77
TMEM88BA6NKF7 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.32■■■□□ 2.76
TMEM88BA6NKF7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
TMEM88BA6NKF7 RARRES2P2-201ENST00000394842 485 ntBASIC32.32■■■□□ 2.76
TMEM88BA6NKF7 ABHD17AP5-201ENST00000580133 923 ntBASIC32.32■■■□□ 2.76
TMEM88BA6NKF7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
TMEM88BA6NKF7 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
TMEM88BA6NKF7 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
TMEM88BA6NKF7 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC32.31■■■□□ 2.76
TMEM88BA6NKF7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC32.31■■■□□ 2.76
TMEM88BA6NKF7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
TMEM88BA6NKF7 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
TMEM88BA6NKF7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC32.29■■■□□ 2.76
TMEM88BA6NKF7 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
TMEM88BA6NKF7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
TMEM88BA6NKF7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC32.28■■■□□ 2.76
TMEM88BA6NKF7 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
TMEM88BA6NKF7 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
TMEM88BA6NKF7 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.26■■■□□ 2.75
TMEM88BA6NKF7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
TMEM88BA6NKF7 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.24■■■□□ 2.75
TMEM88BA6NKF7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC32.23■■■□□ 2.75
TMEM88BA6NKF7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC32.22■■■□□ 2.75
TMEM88BA6NKF7 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC32.21■■■□□ 2.75
TMEM88BA6NKF7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
TMEM88BA6NKF7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
TMEM88BA6NKF7 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC32.18■■■□□ 2.74
TMEM88BA6NKF7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC32.18■■■□□ 2.74
TMEM88BA6NKF7 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC32.17■■■□□ 2.74
TMEM88BA6NKF7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC32.17■■■□□ 2.74
TMEM88BA6NKF7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC32.17■■■□□ 2.74
TMEM88BA6NKF7 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
TMEM88BA6NKF7 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
TMEM88BA6NKF7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
TMEM88BA6NKF7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC32.14■■■□□ 2.74
TMEM88BA6NKF7 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
TMEM88BA6NKF7 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC32.12■■■□□ 2.73
TMEM88BA6NKF7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC32.12■■■□□ 2.73
TMEM88BA6NKF7 DUX4L13-201ENST00000554103 1267 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L15-201ENST00000611059 1267 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L23-201ENST00000615195 1269 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L24-201ENST00000617576 1269 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L22-201ENST00000618238 1269 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L20-201ENST00000619712 1269 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L21-201ENST00000622058 1269 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L10-201ENST00000622460 1267 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 DUX4L25-201ENST00000624915 1269 ntBASIC32.08■■■□□ 2.73
TMEM88BA6NKF7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC32.07■■■□□ 2.72
TMEM88BA6NKF7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC32.07■■■□□ 2.72
TMEM88BA6NKF7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
TMEM88BA6NKF7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
TMEM88BA6NKF7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.05■■■□□ 2.72
TMEM88BA6NKF7 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 HES6-205ENST00000409356 528 ntTSL 2 BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
TMEM88BA6NKF7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.03■■■□□ 2.72
TMEM88BA6NKF7 GPX1-201ENST00000419349 1106 ntBASIC32.01■■■□□ 2.71
TMEM88BA6NKF7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
TMEM88BA6NKF7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC32.01■■■□□ 2.71
TMEM88BA6NKF7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
TMEM88BA6NKF7 RNF126P1-201ENST00000567452 1320 ntBASIC32■■■□□ 2.71
TMEM88BA6NKF7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.99■■■□□ 2.71
TMEM88BA6NKF7 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
TMEM88BA6NKF7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.98■■■□□ 2.71
TMEM88BA6NKF7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.98■■■□□ 2.71
TMEM88BA6NKF7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
TMEM88BA6NKF7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
TMEM88BA6NKF7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
TMEM88BA6NKF7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
TMEM88BA6NKF7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
TMEM88BA6NKF7 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.95■■■□□ 2.71
TMEM88BA6NKF7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
TMEM88BA6NKF7 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.94■■■□□ 2.7
TMEM88BA6NKF7 AC012354.3-201ENST00000623734 483 ntBASIC31.94■■■□□ 2.7
TMEM88BA6NKF7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
TMEM88BA6NKF7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
TMEM88BA6NKF7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
TMEM88BA6NKF7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
TMEM88BA6NKF7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
TMEM88BA6NKF7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC31.9■■■□□ 2.7
TMEM88BA6NKF7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
TMEM88BA6NKF7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.89■■■□□ 2.7
TMEM88BA6NKF7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
TMEM88BA6NKF7 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC31.88■■■□□ 2.69
TMEM88BA6NKF7 NTF6A-201ENST00000591175 560 ntBASIC31.88■■■□□ 2.69
TMEM88BA6NKF7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
TMEM88BA6NKF7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
TMEM88BA6NKF7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
TMEM88BA6NKF7 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
TMEM88BA6NKF7 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC31.84■■■□□ 2.69
TMEM88BA6NKF7 CHML-204ENST00000638121 920 ntTSL 2 BASIC31.84■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms