Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 AL033527.3-201ENST00000566366 1196 ntBASIC17.08■□□□□ 0.32
SMCO3A2RU48 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC17.08■□□□□ 0.32
SMCO3A2RU48 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMCO3A2RU48 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.08■□□□□ 0.32
SMCO3A2RU48 FEM1AP4-201ENST00000443167 1987 ntBASIC17.08■□□□□ 0.32
SMCO3A2RU48 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.08■□□□□ 0.32
SMCO3A2RU48 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SMCO3A2RU48 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC17.07■□□□□ 0.32
SMCO3A2RU48 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC17.07■□□□□ 0.32
SMCO3A2RU48 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 AC012354.3-201ENST00000623734 483 ntBASIC17.07■□□□□ 0.32
SMCO3A2RU48 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.07■□□□□ 0.32
SMCO3A2RU48 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMCO3A2RU48 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.06■□□□□ 0.32
SMCO3A2RU48 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.06■□□□□ 0.32
SMCO3A2RU48 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC17.06■□□□□ 0.32
SMCO3A2RU48 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.06■□□□□ 0.32
SMCO3A2RU48 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 AC090340.1-201ENST00000620778 4980 ntBASIC17.06■□□□□ 0.32
SMCO3A2RU48 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC17.06■□□□□ 0.32
SMCO3A2RU48 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
SMCO3A2RU48 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMCO3A2RU48 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SMCO3A2RU48 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC17.05■□□□□ 0.32
SMCO3A2RU48 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SMCO3A2RU48 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.05■□□□□ 0.32
SMCO3A2RU48 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC17.05■□□□□ 0.32
SMCO3A2RU48 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.05■□□□□ 0.32
SMCO3A2RU48 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.05■□□□□ 0.32
SMCO3A2RU48 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SMCO3A2RU48 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMCO3A2RU48 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 AC021242.3-201ENST00000607598 1377 ntBASIC17.04■□□□□ 0.32
SMCO3A2RU48 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 MTDHP2-201ENST00000601468 714 ntBASIC17.04■□□□□ 0.32
SMCO3A2RU48 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 AL157384.1-201ENST00000445995 2473 ntBASIC17.04■□□□□ 0.32
SMCO3A2RU48 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SMCO3A2RU48 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMCO3A2RU48 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SMCO3A2RU48 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMCO3A2RU48 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SMCO3A2RU48 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms