Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
VPS9D1Q9Y2B5 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS9D1Q9Y2B5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 AC010542.4-201ENST00000563151 1910 ntBASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 AC008764.7-201ENST00000593779 1081 ntBASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 AL355001.2-201ENST00000620617 1191 ntBASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
VPS9D1Q9Y2B5 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
VPS9D1Q9Y2B5 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
VPS9D1Q9Y2B5 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.32■■□□□ 1
VPS9D1Q9Y2B5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 AP004607.7-201ENST00000527152 1677 ntBASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 AC099791.1-201ENST00000416440 715 ntBASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 AC104564.3-201ENST00000582367 638 ntBASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS9D1Q9Y2B5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 AC110285.6-201ENST00000617652 491 ntBASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 AC244015.2-201ENST00000616358 1861 ntBASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VPS9D1Q9Y2B5 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 AP001330.3-201ENST00000520123 633 ntBASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS9D1Q9Y2B5 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS9D1Q9Y2B5 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.28■■□□□ 1
VPS9D1Q9Y2B5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS9D1Q9Y2B5 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms